Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G17
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    25   0.30 
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    25   0.30 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   3.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   3.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.6  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = -3

Query: 354 LRNYTPHTLIRRYMSSVM-DL-----EIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVY 193
           +R     T++ +YM  +M D+     E+H  E I+      ++   + + ++   K CV 
Sbjct: 17  VRGIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAAKNG--ADMSQLGCLKACVM 74

Query: 192 KVILLVY*LTNYIKPVYKI 136
           K I ++     Y++PVYK+
Sbjct: 75  KRIEMLKGTELYVEPVYKM 93


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = -3

Query: 354 LRNYTPHTLIRRYMSSVM-DL-----EIHYFEQISNLCHGQQHSMQSTLRRIFPDKLCVY 193
           +R     T++ +YM  +M D+     E+H  E I+      ++   + + ++   K CV 
Sbjct: 17  VRGIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAAKNG--ADMSQLGCLKACVM 74

Query: 192 KVILLVY*LTNYIKPVYKI 136
           K I ++     Y++PVYK+
Sbjct: 75  KRIEMLKGTELYVEPVYKM 93


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 327 IRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 217
           IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 130 IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 327 IRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 217
           IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 130 IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 166


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 327 IRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 217
           IR  +++   + + YF     LCH +  S   T+R I
Sbjct: 69  IRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 105


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 275 KFRIYVTASSTQCKARYGEYSQ 210
           KFR +V+  S   + RY  Y+Q
Sbjct: 452 KFRRWVSTMSRPFEVRYDPYTQ 473


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 342 TPHTLIRRYMSSVMDLEIHYF 280
           T   L+R +  +V+D E+H F
Sbjct: 42  TTSGLVRGFPRTVLDKEVHVF 62


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 342 TPHTLIRRYMSSVMDLEIHYF 280
           T   L+R +  +V+D E+H F
Sbjct: 42  TTSGLVRGFPRTVLDKEVHVF 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,544
Number of Sequences: 438
Number of extensions: 2243
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)