Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G14
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   6.8  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   6.8  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 24/88 (27%), Positives = 35/88 (39%)
 Frame = -3

Query: 331 FFIYNSNTTNDYY*PNILPLLFRXXXXXNI*EIRSHTIKL*TIPCFGRHEVIFVILNIKM 152
           +FIY     NDY  PN L  L        +   R+H I     P   +  VI        
Sbjct: 170 YFIYGPWHANDYIKPNHLLFLIVGWAFAVLSNFRTHIILRDLRPAGSKKRVI----PTGY 225

Query: 151 HYNLINR*MLLNTGVDWLFWIYYLITKN 68
            +NL++        + WLF  + L+TK+
Sbjct: 226 GFNLVSFPNYFFESLGWLF--FALLTKS 251


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 381 NGNDSRSIVYNVSHQFSFSFIIQTPQTIIINLIYY-LSYFVIIIMIIYEKFV 229
           +G D +S +++V+   SFS +       I+NL+ + LS +VI   +  EK+V
Sbjct: 115 SGKDWKSFIHDVNMACSFSDVALMGLDQILNLVSFGLSAYVISYYV--EKYV 164


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 291 NLIYYLSYFVIIIMIIYEKFVVTQLNCEQFLVSADMRLFLSF 166
           N I ++  FVI    IY   +   L  +Q++++ D+R  +S+
Sbjct: 33  NFIQFIEEFVIDNDFIYRTQLRDNLVVKQYMLNIDLRHLISY 74


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 121 LNTGVDWLFWIYYLITKN 68
           L +GV WL W  Y I KN
Sbjct: 30  LMSGVQWLAWGIYKINKN 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,736
Number of Sequences: 5004
Number of extensions: 28537
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)