Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G14
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    30   1.1  
AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 348 VSHQFSFSFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 202
           V+H     F++ T   + INL Y L  F++ +  +   FV + L+C+ F
Sbjct: 68  VAHMKGSMFVVFT-HNLSINLSYSLGEFLVCLHCVLTGFVASLLSCQFF 115


>AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical
           protein C01B4.7 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 327 SFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 202
           S I +TPQ  I N +++    V I+++      +TQ+N + F
Sbjct: 18  SDIFETPQRKISNFVFWNQTRVFILILSLTCMTLTQINSQIF 59


>AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical
           protein Y19D10A.4 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 327 SFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFVVTQLNCEQF 202
           S I +TPQ  I N +++    V I+++      +TQ+N + F
Sbjct: 18  SDIFETPQRKISNFVFWNQTRVFILILSLTCMTLTQINSQIF 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,199,180
Number of Sequences: 27780
Number of extensions: 153990
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)