Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G14
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.47 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 381 NGNDSRSIVYNVSHQFSF---SFIIQTPQTIIINLIYYLSYFVIIIMIIYEKFV 229
           N +D+ S+V     Q+++   S +I     + I+L+Y +   + I   IYE F+
Sbjct: 373 NEDDNTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNIYENFI 426


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 FYIKNDKNNLMSAETRNCSQFNCV 226
           FY ++ KNNL++A  R     +C+
Sbjct: 48  FYRQDTKNNLLNAYVRFKLVTDCI 71


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 384 FNGNDSRSIVYNVSH 340
           +N N+ + + YN++H
Sbjct: 94  YNNNNYKQLCYNINH 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,035
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)