Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G12
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    30   0.065
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   2.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   3.2  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    24   4.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   4.3  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    24   5.6  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   5.6  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.5  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    23   7.5  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    23   7.5  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    23   9.9  

>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 30.3 bits (65), Expect = 0.065
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 46  LTRYPDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSR--CLL 192
           L RY  SFH +     L+CF  ++C + Q   A+T ++C + + S+  C+L
Sbjct: 17  LQRYFHSFHCF----FLLCFTVMLCVVQQCSSAMTSFRCPTFSLSKYTCVL 63


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 70  HIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCL 189
           H++ +  +       ICS    G  + C+ C+    SRCL
Sbjct: 698 HVFHVNAIFKPSRCYICSESVWGSELRCFHCSISCHSRCL 737


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 277 SRTPQPGRSSCT*CP 233
           SRTP P R  C+ CP
Sbjct: 24  SRTPSPEREYCSDCP 38


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 248  LHIVSFGSHGSRNESGSLSNKQ 183
            LH+    SH    ES SLSN Q
Sbjct: 1924 LHVNELSSHSGTEESESLSNGQ 1945


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 296 SGGIPFISNSTTWEIFLHIVSFGSHGSR 213
           + G+P I N   WE+   +V    +G +
Sbjct: 119 AAGVPIIQNPKGWEVSSTVVQLTENGEK 146


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  GITSANSISGLVSYLQNGARADLL 104
           G+TS N +  +V++ +N  + DLL
Sbjct: 438 GVTSINLMVDVVAFFENNIKPDLL 461


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  LTRYPDSFHIYKMALVLICFLA 111
           +TR+  +FH+  + + +IC LA
Sbjct: 214 ITRFYATFHLIVLVVCMICLLA 235


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 103 SKSARAPFCKYETSPDIELALVIPG 29
           S S +AP  K +T+P   L+ ++ G
Sbjct: 411 SSSTKAPLTKQQTNPSTPLSSIMAG 435


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 149  LVTSAIVTTTLVAC*TSCRTHYGCHASRRTLCAGRSPRLWSS 274
            L++SA+    L    +    H G  A + TL  GRSP  W S
Sbjct: 1285 LISSALQPNLLELTISHMLQHIGQRAFQ-TLIHGRSPYTWKS 1325


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 51  SISGLVSYLQNGARADLLFGGNMQFATTRFSNNLLP 158
           +++ L++ + +   A L F G++      F  NL+P
Sbjct: 230 NLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVP 265


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 73  IYKMALVLICFLAVICSL 126
           I+ +  +LICFLAV+ +L
Sbjct: 40  IFALKFILICFLAVLEAL 57


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +1

Query: 70  HIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKLPDSLRLPCEPKDTMCR 249
           + +K + + I   A    L+ Q L   C Q    + S+ ++D   +  R    PK+  C 
Sbjct: 72  NFWKKSGMSILDFACGTGLISQHLFPYCKQIVGIDVSQDMVDVYNEKFRKMNIPKERACA 131

Query: 250 KISQVVEFEMNGMPPDS 300
            +  + + + NG  P S
Sbjct: 132 YVLSLDDLDGNGDEPFS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,082
Number of Sequences: 5004
Number of extensions: 23742
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)