Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G12
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377... 31 0.17
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289... 29 0.53
01_06_0270 + 28048449-28048577,28048915-28048978,28049537-280496... 28 1.2
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 27 2.1
05_01_0348 + 2726710-2727026,2727289-2727459,2727555-2727628,272... 27 2.1
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 27 2.8
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 26 4.9
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 26 4.9
11_01_0142 - 1169007-1169032,1169351-1169538,1169978-1170131,117... 26 4.9
04_01_0569 + 7313887-7313926,7315033-7315067,7315145-7315387,731... 26 4.9
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 26 6.5
10_02_0048 - 4570538-4570984 26 6.5
05_07_0047 + 27314254-27314362,27316333-27316448,27316639-27316980 26 6.5
04_04_0440 - 25219961-25221529 26 6.5
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 26 6.5
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 25 8.6
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 25 8.6
01_03_0204 + 13771346-13772680 25 8.6
>01_06_0291 -
28236235-28236576,28236785-28236900,28237560-28237731,
28238916-28239044,28239165-28239320
Length = 304
Score = 31.1 bits (67), Expect = 0.17
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 58 PDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKLPDSLRLPCEPKD 237
PD I K ++ + L + CS + Q Y N+ ND L ++ P L + ++
Sbjct: 195 PDPSKIRKEDIIGVIVLLLTCSYMGQEFIRVGYYVNNDNDDEQLREEPPAKLLIDRVQRN 254
Query: 238 TMCRKISQVVEFEMNGMPPDS 300
+ K S V +F +N P S
Sbjct: 255 ILADKPS-VTKFPINFHPETS 274
>05_07_0063 -
27428056-27428184,27428321-27428460,27428698-27428926,
27429231-27429281,27429411-27429636,27430230-27430300,
27430466-27430585,27430671-27430865,27431088-27431152,
27431232-27431322,27431607-27431707,27431767-27431817,
27432076-27432177,27432406-27432510,27432600-27432663,
27433023-27433151
Length = 622
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +1
Query: 19 RGSRRE*PVLTRYPDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLD 195
+G + RY DS+ + ++ ++ ++ ++CS L+ + + C R LLD
Sbjct: 513 KGGNPSHSIFDRYNDSY-LRRIGTTVLAYINMVCSTLRNSIPKSIVYCQVREAKRSLLD 570
>01_06_0270 +
28048449-28048577,28048915-28048978,28049537-28049638,
28049971-28050021,28050075-28050172,28050395-28050485,
28050718-28050782,28050913-28051107,28051207-28051326,
28051592-28051662,28051787-28052012,28052330-28052407,
28052507-28052735,28052958-28053097,28053571-28053699
Length = 595
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +1
Query: 43 VLTRYPDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDK 198
+ RY DS+ + +++ ++ ++ ++CS L+ + + C R LLD+
Sbjct: 494 IFDRYNDSY-LRRISTNVLAYVNMVCSSLRNSIPKSIVYCQVREAKRTLLDR 544
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 208 SPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFCKYETSP 59
S C+TS SR DY + +++ + I P S SAR P + T+P
Sbjct: 227 SDKPCVTSRPSRFDYIGSSASSISMTAS--IASPSSSSAR-PRAPHSTAP 273
>05_01_0348 +
2726710-2727026,2727289-2727459,2727555-2727628,
2727872-2727969,2728159-2728227,2728773-2728819,
2728949-2729072,2729148-2729216,2729297-2729400,
2729826-2729901,2730275-2730375,2730648-2730705
Length = 435
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 121 SLLQQGLAITCYQCNSHNDS---RCLLDKLPDSLR 216
SL+QQG C+ SHN S C L+ DS R
Sbjct: 72 SLIQQGQNFRCHSYGSHNSSETKECSLEDGTDSYR 106
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 292 AASHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNES 176
+A S+RTP G + PS R + SPA C T N +
Sbjct: 169 SACSSNRTPTVGDALVFDPPSLRENSDASPAPCCTGNST 207
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 283 HSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESRCDY 164
+SSR PQ +S T SAR + P + S E C+Y
Sbjct: 148 YSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNY 187
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 142 LNLVVANCILPPKSKSARAPFCKYETSPD 56
++L ++CILP S P C+YE D
Sbjct: 353 MHLYHSSCILPWLSSRNTCPVCRYELPTD 381
>11_01_0142 -
1169007-1169032,1169351-1169538,1169978-1170131,
1170565-1170656,1170782-1170961,1171080-1171244,
1171309-1171709
Length = 401
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 283 HSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESRCDY 164
+SSR PQ +S T SAR + P + S E C+Y
Sbjct: 148 YSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNY 187
>04_01_0569 +
7313887-7313926,7315033-7315067,7315145-7315387,
7315511-7315525
Length = 110
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 142 AITCYQCNSHNDSRCLLDKLPDSLRLP 222
A+ C+ + N R +KLPDSL P
Sbjct: 76 ALKCWDLHMDNVHRAFSEKLPDSLSSP 102
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 142 LNLVVANCILPPKSKSARAPFCKYETSPD 56
++L ++CILP S P C+YE D
Sbjct: 895 MHLYHSSCILPWFSSRNTCPVCRYELPTD 923
>10_02_0048 - 4570538-4570984
Length = 148
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 291 RHPIHLELHNLGDLPAHSVLRLA 223
R P+ LHN+G P H+ RLA
Sbjct: 37 RLPVISNLHNIGKNPHHAFARLA 59
>05_07_0047 + 27314254-27314362,27316333-27316448,27316639-27316980
Length = 188
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 58 PDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKLPDSLRLPCEPKD 237
PD I + ++ + L + CS + Q Y N+ D L ++ P L + ++
Sbjct: 79 PDPSKIREEDIIGVTVLLLTCSYMGQEFMRVGYYVNNDYDDEQLREEPPAKLLIDRVQRN 138
Query: 238 TMCRKISQVVEFEMNGMPPDS 300
+ K +V +F +N P S
Sbjct: 139 ILADK-PRVTKFPINFHPEPS 158
>04_04_0440 - 25219961-25221529
Length = 522
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/67 (23%), Positives = 26/67 (38%)
Frame = -2
Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESRCDYCTGNKLLLNLVVAN 122
C R + S + R PSAR+A + S++ ++ L VA+
Sbjct: 107 CARGSGTDSLSDDGARQVAAALPSARLARLKLRGLRQLSDDGLASLAGATPVIRKLSVAS 166
Query: 121 CILPPKS 101
C PK+
Sbjct: 167 CSFGPKA 173
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 15 RARIPPGITSANSISGLVS--YLQNGARADLLFGGNMQFATTRFS 143
RARIPP +++A S+ S L N A L F + F+T R S
Sbjct: 84 RARIPPAVSTARSVLAASSNVNLTNAATNCLTF---LSFSTHRLS 125
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPA 200
CYR++ + P+ SS + CP A + ++P+
Sbjct: 62 CYRSSPSLPQRPRSSYSSSSPCPHAFTTSTVAPS 95
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 33 GITSANSISGLVS-YLQNGARADLLFGGNM 119
G S NS LV+ Y++NG+ A++LF N+
Sbjct: 581 GFCSENSHRMLVTEYIENGSLANILFNENI 610
>01_03_0204 + 13771346-13772680
Length = 444
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 82 MALVLICFLAVICSLLQQGLAITCYQC-NSHNDSRCLL 192
M + FL+ +C L Q LA + C SHN RC++
Sbjct: 62 MTFDMPAFLSKMCELFVQELAARAWACAQSHN--RCII 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,605,003
Number of Sequences: 37544
Number of extensions: 184964
Number of successful extensions: 548
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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