Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G12
         (302 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98885-5|CAO72061.1| 1189|Homo sapiens bromodomain containing 1 ...    29   2.7  
BC047508-1|AAH47508.1| 1189|Homo sapiens BRD1 protein protein.         29   2.7  
BC041178-1|AAH41178.1|  560|Homo sapiens EBF1 protein protein.         29   2.7  
BC038805-1|AAH38805.1|  591|Homo sapiens early B-cell factor 1 p...    29   2.7  
BC030007-1|AAH30007.1| 1189|Homo sapiens BRD1 protein protein.         29   2.7  
AF208502-1|AAF19643.1|  586|Homo sapiens early B-cell transcript...    29   2.7  
CR457165-1|CAG33446.1|  153|Homo sapiens LOC51255 protein.             29   3.5  
BC015540-1|AAH15540.1|  376|Homo sapiens synaptotagmin-like 2 pr...    29   3.5  
BC002803-1|AAH02803.1|  153|Homo sapiens hypothetical protein LO...    29   3.5  
AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associate...    29   3.5  
AK124754-1|BAC85937.1|  893|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AK074737-1|BAC11170.1|  376|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AK024872-1|BAB15030.1|  376|Homo sapiens protein ( Homo sapiens ...    29   3.5  
AC016753-5|AAY24343.1|  153|Homo sapiens unknown protein.              29   3.5  
U18800-1|AAB36870.1|  131|Homo sapiens myelin/oligodendrocyte gl...    28   6.2  
BX120002-3|CAI95560.2|  131|Homo sapiens myelin oligodendrocyte ...    28   6.2  
AL929591-3|CAI41911.2|  131|Homo sapiens myelin oligodendrocyte ...    28   6.2  
AL662826-18|CAI17400.3|  131|Homo sapiens myelin oligodendrocyte...    28   6.2  
AK001178-1|BAA91536.1|  249|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AJ242015-1|CAB42085.1|  775|Homo sapiens eMDC II protein protein.      28   6.2  
AF137334-1|AAD25099.1|  775|Homo sapiens metalloprotease disinte...    28   6.2  

>Z98885-5|CAO72061.1| 1189|Homo sapiens bromodomain containing 1
           protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPAA 197
           C ++A  S R P+P R+S    P+A  +AV  PA+
Sbjct: 841 CTQSALVSGRPPEPTRASSGDVPAAAASAVAEPAS 875


>BC047508-1|AAH47508.1| 1189|Homo sapiens BRD1 protein protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPAA 197
           C ++A  S R P+P R+S    P+A  +AV  PA+
Sbjct: 841 CTQSALVSGRPPEPTRASSGDVPAAAASAVAEPAS 875


>BC041178-1|AAH41178.1|  560|Homo sapiens EBF1 protein protein.
          Length = 560

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 217 AVMSPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFCKYETSP 59
           A++  +  + S+ S    C+ +  + +   AN +   K KSA AP  + +TSP
Sbjct: 485 AIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSP 537


>BC038805-1|AAH38805.1|  591|Homo sapiens early B-cell factor 1
           protein.
          Length = 591

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 217 AVMSPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFCKYETSP 59
           A++  +  + S+ S    C+ +  + +   AN +   K KSA AP  + +TSP
Sbjct: 516 AIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSP 568


>BC030007-1|AAH30007.1| 1189|Homo sapiens BRD1 protein protein.
          Length = 1189

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPAA 197
           C ++A  S R P+P R+S    P+A  +AV  PA+
Sbjct: 841 CTQSALVSGRPPEPTRASSGDVPAAAASAVAEPAS 875


>AF208502-1|AAF19643.1|  586|Homo sapiens early B-cell transcription
           factor protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 217 AVMSPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFCKYETSP 59
           A++  +  + S+ S    C+ +  + +   AN +   K KSA AP  + +TSP
Sbjct: 511 AIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSP 563


>CR457165-1|CAG33446.1|  153|Homo sapiens LOC51255 protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 139 NLVVANCILPPKSKSARAPFCKYETSPD 56
           +L  ++CILP  SK+   P C+YE   D
Sbjct: 96  HLFHSSCILPWLSKTNSCPLCRYELPTD 123


>BC015540-1|AAH15540.1|  376|Homo sapiens synaptotagmin-like 2
           protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  GITSANSISGLVSYLQNGARADLLFGGNMQFA 128
           G+TS +S+SG V  + +G   +L   GN+QFA
Sbjct: 46  GMTSLSSVSGSVMSVYSGDFGNLEVKGNIQFA 77


>BC002803-1|AAH02803.1|  153|Homo sapiens hypothetical protein
           LOC51255 protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 139 NLVVANCILPPKSKSARAPFCKYETSPD 56
           +L  ++CILP  SK+   P C+YE   D
Sbjct: 96  HLFHSSCILPWLSKTNSCPLCRYELPTD 123


>AY386362-1|AAR25619.1| 1780|Homo sapiens breast cancer-associated
            antigen SGA-72M protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 33   GITSANSISGLVSYLQNGARADLLFGGNMQFA 128
            G+TS +S+SG V  + +G   +L   GN+QFA
Sbjct: 1450 GMTSLSSVSGSVMSVYSGDFGNLEVKGNIQFA 1481


>AK124754-1|BAC85937.1|  893|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42764 fis, clone BRAWH3002821, moderately
           similar to Mus musculus synaptotagmin-like 2 (Sytl2). ).
          Length = 893

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  GITSANSISGLVSYLQNGARADLLFGGNMQFA 128
           G+TS +S+SG V  + +G   +L   GN+QFA
Sbjct: 563 GMTSLSSVSGSVMSVYSGDFGNLEVKGNIQFA 594


>AK074737-1|BAC11170.1|  376|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90256 fis, clone NT2RM4000417, highly similar to
           Synaptotagmin-like protein 2. ).
          Length = 376

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  GITSANSISGLVSYLQNGARADLLFGGNMQFA 128
           G+TS +S+SG V  + +G   +L   GN+QFA
Sbjct: 46  GMTSLSSVSGSVMSVYSGDFGNLEVKGNIQFA 77


>AK024872-1|BAB15030.1|  376|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21219 fis, clone COL00541. ).
          Length = 376

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  GITSANSISGLVSYLQNGARADLLFGGNMQFA 128
           G+TS +S+SG V  + +G   +L   GN+QFA
Sbjct: 46  GMTSLSSVSGSVMSVYSGDFGNLEVKGNIQFA 77


>AC016753-5|AAY24343.1|  153|Homo sapiens unknown protein.
          Length = 153

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 139 NLVVANCILPPKSKSARAPFCKYETSPD 56
           +L  ++CILP  SK+   P C+YE   D
Sbjct: 96  HLFHSSCILPWLSKTNSCPLCRYELPTD 123


>U18800-1|AAB36870.1|  131|Homo sapiens myelin/oligodendrocyte
           glycoprotein alpha 4 isoform protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 43  VLTRYPDSFH-IYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKL-----P 204
           V + Y D F+ +    LVL+  L V+   +  GL   C Q       R  ++ L     P
Sbjct: 24  VSSSYADPFYWVSPGVLVLLAVLPVLLLQITVGLVFLCLQYRLRGKLRAEIENLHRTFDP 83

Query: 205 DSLRLPC 225
             LR+PC
Sbjct: 84  HFLRVPC 90


>BX120002-3|CAI95560.2|  131|Homo sapiens myelin oligodendrocyte
           glycoprotein protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 43  VLTRYPDSFH-IYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKL-----P 204
           V + Y D F+ +    LVL+  L V+   +  GL   C Q       R  ++ L     P
Sbjct: 24  VSSSYADPFYWVSPGVLVLLAVLPVLLLQITVGLVFLCLQYRLRGKLRAEIENLHRTFDP 83

Query: 205 DSLRLPC 225
             LR+PC
Sbjct: 84  HFLRVPC 90


>AL929591-3|CAI41911.2|  131|Homo sapiens myelin oligodendrocyte
           glycoprotein protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 43  VLTRYPDSFH-IYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKL-----P 204
           V + Y D F+ +    LVL+  L V+   +  GL   C Q       R  ++ L     P
Sbjct: 24  VSSSYADPFYWVSPGVLVLLAVLPVLLLQITVGLVFLCLQYRLRGKLRAEIENLHRTFDP 83

Query: 205 DSLRLPC 225
             LR+PC
Sbjct: 84  HFLRVPC 90


>AL662826-18|CAI17400.3|  131|Homo sapiens myelin oligodendrocyte
           glycoprotein protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +1

Query: 43  VLTRYPDSFH-IYKMALVLICFLAVICSLLQQGLAITCYQCNSHNDSRCLLDKL-----P 204
           V + Y D F+ +    LVL+  L V+   +  GL   C Q       R  ++ L     P
Sbjct: 24  VSSSYADPFYWVSPGVLVLLAVLPVLLLQITVGLVFLCLQYRLRGKLRAEIENLHRTFDP 83

Query: 205 DSLRLPC 225
             LR+PC
Sbjct: 84  HFLRVPC 90


>AK001178-1|BAA91536.1|  249|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10316 fis, clone NT2RM2000422, highly similar to
           SODIUM- AND CHLORIDE-DEPENDENT TRANSPORTER NTT73. ).
          Length = 249

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 43  VLTRYPDSFHIYKMALVLICFLAVIC--SLLQQGLAITCYQC 162
           ++T   D+F + K  L +IC L   C   +L   L IT  QC
Sbjct: 198 IVTPIVDTFKVRKEILTVICCLLAFCIGLILCNALEITLLQC 239


>AJ242015-1|CAB42085.1|  775|Homo sapiens eMDC II protein protein.
          Length = 775

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 TCYQCNSHNDSRCLLDKLPDSLRLPCEPKDTMCRKI 255
           +CY  N          ++ D+L +PC+  DTMC K+
Sbjct: 530 SCYNRNEGGSKYGYCRRVDDTL-IPCKANDTMCGKL 564


>AF137334-1|AAD25099.1|  775|Homo sapiens metalloprotease
           disintegrin cysteine-rich protein, transmembrane form
           MDC-Lm protein.
          Length = 775

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 TCYQCNSHNDSRCLLDKLPDSLRLPCEPKDTMCRKI 255
           +CY  N          ++ D+L +PC+  DTMC K+
Sbjct: 530 SCYNRNEGGSKYGYCRRVDDTL-IPCKANDTMCGKL 564


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,314,366
Number of Sequences: 237096
Number of extensions: 1028241
Number of successful extensions: 2595
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2595
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)