Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G12
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-6|AAC24401.1| 127|Caenorhabditis elegans Hypothetical pr... 31 0.16
Z77669-1|CAB01246.1| 231|Caenorhabditis elegans Hypothetical pr... 31 0.21
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 30 0.28
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 29 0.85
U56965-11|AAB52666.1| 137|Caenorhabditis elegans Hypothetical p... 28 1.1
L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protei... 27 2.0
L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeo... 27 2.0
AF016427-6|AAY86198.1| 177|Caenorhabditis elegans Hypothetical ... 27 2.6
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 3.4
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 3.4
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 3.4
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 3.4
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 26 4.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 26 4.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 26 4.5
U41991-3|AAA83343.2| 350|Caenorhabditis elegans Seven tm recept... 26 4.5
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ... 26 4.5
AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical ... 26 4.5
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 26 6.0
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 25 7.9
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 25 7.9
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 25 7.9
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 25 7.9
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 25 7.9
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 25 7.9
>U88168-6|AAC24401.1| 127|Caenorhabditis elegans Hypothetical
protein K11H12.7 protein.
Length = 127
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 103 FLAVICSLLQQGLAITCYQCNSHNDSRCL 189
FL V SL A+ CY CNS N C+
Sbjct: 3 FLIVFASLFAVSAALNCYICNSLNQPECV 31
>Z77669-1|CAB01246.1| 231|Caenorhabditis elegans Hypothetical
protein T07F10.6 protein.
Length = 231
Score = 30.7 bits (66), Expect = 0.21
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 301 CYRAASHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESRCDYCTGNKLLLNLVV 128
C R + + P G ++C + AACLT ++RC C K+L ++++
Sbjct: 166 CVRQQMNEACGPSAGAAACGAATNIERRLDFLDAACLTEMDARCSVCQ-LKILTSIII 222
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 133 QGLAITCYQCNSHN--DSRCLLDKLPDSLRLPCEPKDTMCRKISQVVEFEMN 282
Q L +TC S N ++ L+D+LP+ + P+ +CR + +++E +N
Sbjct: 327 QKLGLTCALLESGNWKQAQMLIDRLPEYYAVQASPR--LCRALCKIIEKSIN 376
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
protein R134.1 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 24 IPPGITSANSISGLVSYLQNGARADL--LFGGNMQFATTRFSN 146
IP +TS N ++GLV+ QN +R L L+G + Q+ T N
Sbjct: 399 IPQFVTSFNGMTGLVAINQNLSRMPLYQLYGLDEQYEQTSLMN 441
>U56965-11|AAB52666.1| 137|Caenorhabditis elegans Hypothetical
protein C15H9.9 protein.
Length = 137
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +1
Query: 100 CFLAVICSLLQQGLAITCYQCNSHNDSRCLL--DKLPDSLRLPCEP--KDTM-------C 246
CF+ + L I+CYQC S+ + C D ++ + C P + T C
Sbjct: 5 CFVLLASLALGVSANISCYQCTSNENPTCDANDDGALEAFKKTCTPLTEGTFKGNAAVGC 64
Query: 247 RKISQVVE 270
RKI+Q VE
Sbjct: 65 RKITQSVE 72
>L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protein
protein.
Length = 303
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 256 RSSCT*CPSARMAAVMSPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFC 77
R+SC P++ A V S E R T ++LL +A ++PP S+ P C
Sbjct: 110 RASCPEPPASSQATVTLQVPSTGSPERRRYSETNMEVLLREQLAQ-LMPPTSQLPGMPGC 168
Query: 76 KYETSP 59
Y+ P
Sbjct: 169 YYQHVP 174
>L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeobox
protein 23 protein.
Length = 305
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 256 RSSCT*CPSARMAAVMSPAACLTSNESRCDYCTGNKLLLNLVVANCILPPKSKSARAPFC 77
R+SC P++ A V S E R T ++LL +A ++PP S+ P C
Sbjct: 112 RASCPEPPASSQATVTLQVPSTGSPERRRYSETNMEVLLREQLAQ-LMPPTSQLPGMPGC 170
Query: 76 KYETSP 59
Y+ P
Sbjct: 171 YYQHVP 176
>AF016427-6|AAY86198.1| 177|Caenorhabditis elegans Hypothetical
protein F32D1.11 protein.
Length = 177
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 94 LICFLAVICSLLQQGLAITCYQCN 165
++ LAV ++LQ G A CY CN
Sbjct: 1 MLKILAVTLTILQLGHAFECYTCN 24
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 286 SHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESR 173
+HS TP P S C+ PS+ +A+ +P+ +ESR
Sbjct: 217 THSVSTPSPTDSVCS--PSSSVASSATPSTSSPVDESR 252
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 286 SHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESR 173
+HS TP P S C+ PS+ +A+ +P+ +ESR
Sbjct: 217 THSVSTPSPTDSVCS--PSSSVASSATPSTSSPVDESR 252
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 286 SHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESR 173
+HS TP P S C+ PS+ +A+ +P+ +ESR
Sbjct: 217 THSVSTPSPTDSVCS--PSSSVASSATPSTSSPVDESR 252
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 286 SHSSRTPQPGRSSCT*CPSARMAAVMSPAACLTSNESR 173
+HS TP P S C+ PS+ +A+ +P+ +ESR
Sbjct: 122 THSVSTPSPTDSVCS--PSSSVASSATPSTSSPVDESR 157
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 RIPPGITSANSISGLVSYLQ-NGARADLLFGGNMQFATTRFSNNLLPVQ*SQRLSLLVRQ 197
R+P + S N+ S ++ + + A LFGG FAT S+N P Q S+ Q
Sbjct: 886 RVPATVGSLNAASAAMTGISFHSDDAMRLFGG-ASFATKLLSDNKKPCNHQQYASIHHIQ 944
Query: 198 AAGLITAAMRAEGHYVQEDLPGCGVRD 278
A ++ + + + VRD
Sbjct: 945 EGAFRAALIKMSSMFRERNGCAISVRD 971
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 RIPPGITSANSISGLVSYLQ-NGARADLLFGGNMQFATTRFSNNLLPVQ*SQRLSLLVRQ 197
R+P + S N+ S ++ + + A LFGG FAT S+N P Q S+ Q
Sbjct: 886 RVPATVGSLNAASAAMTGISFHSDDAMRLFGG-ASFATKLLSDNKKPCNHQQYASIHHIQ 944
Query: 198 AAGLITAAMRAEGHYVQEDLPGCGVRD 278
A ++ + + + VRD
Sbjct: 945 EGAFRAALIKMSSMFRERNGCAISVRD 971
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 RIPPGITSANSISGLVSYLQ-NGARADLLFGGNMQFATTRFSNNLLPVQ*SQRLSLLVRQ 197
R+P + S N+ S ++ + + A LFGG FAT S+N P Q S+ Q
Sbjct: 886 RVPATVGSLNAASAAMTGISFHSDDAMRLFGG-ASFATKLLSDNKKPCNHQQYASIHHIQ 944
Query: 198 AAGLITAAMRAEGHYVQEDLPGCGVRD 278
A ++ + + + VRD
Sbjct: 945 EGAFRAALIKMSSMFRERNGCAISVRD 971
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 RIPPGITSANSISGLVSYLQ-NGARADLLFGGNMQFATTRFSNNLLPVQ*SQRLSLLVRQ 197
R+P + S N+ S ++ + + A LFGG FAT S+N P Q S+ Q
Sbjct: 886 RVPATVGSLNAASAAMTGISFHSDDAMRLFGG-ASFATKLLSDNKKPCNHQQYASIHHIQ 944
Query: 198 AAGLITAAMRAEGHYVQEDLPGCGVRD 278
A ++ + + + VRD
Sbjct: 945 EGAFRAALIKMSSMFRERNGCAISVRD 971
>U41991-3|AAA83343.2| 350|Caenorhabditis elegans Seven tm receptor
protein 220 protein.
Length = 350
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 43 VLTRYPDSFHIYKMALVLICFLAVICSLLQQGLAITCYQCNS 168
+LT+ P +YK +V I ++ SLL+ L Y S
Sbjct: 33 ILTKSPRQLGVYKYLMVFISIFEILYSLLEVTLTPIHYSYRS 74
>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
protein C42C1.4a protein.
Length = 1259
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 157 QCNSHNDSRCLLDKLPDSLRLPCEPKD 237
+C+++ D C D +PD L +P E D
Sbjct: 1208 ECSTNIDRTCTCDGIPDRLVVPREKPD 1234
>AC006648-5|AAF39853.1| 701|Caenorhabditis elegans Hypothetical
protein F59H6.2 protein.
Length = 701
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 124 NCILPPKSKSARAPFCKYETSPDIELALVI 35
N IL ++ A FC+Y PDI + +I
Sbjct: 450 NLILTTNERAIWAEFCRYTVCPDISIFQLI 479
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 227 SRRTLCAGRSPRLW 268
SRR L AGRSP LW
Sbjct: 109 SRRKLRAGRSPSLW 122
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 LAITCYQCNSHNDSRCLLDKLPDSLRLPCEPK--DTMCR 249
L TCY+ NS L PD +PC+ D +CR
Sbjct: 801 LGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICR 839
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 155 TSAIVTTTLVAC*TSCRTHYGCHASRRTLCA 247
T+ T T + C SCRTH+ + + CA
Sbjct: 5 TAEASTPTCLVCGLSCRTHFHFGGASCSACA 35
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 LAITCYQCNSHNDSRCLLDKLPDSLRLPCEPK--DTMCR 249
L TCY+ NS L PD +PC+ D +CR
Sbjct: 799 LGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICR 837
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 LAITCYQCNSHNDSRCLLDKLPDSLRLPCEPK--DTMCR 249
L TCY+ NS L PD +PC+ D +CR
Sbjct: 799 LGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICR 837
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 LAITCYQCNSHNDSRCLLDKLPDSLRLPCEPK--DTMCR 249
L TCY+ NS L PD +PC+ D +CR
Sbjct: 799 LGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICR 837
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 139 LAITCYQCNSHNDSRCLLDKLPDSLRLPCEPK--DTMCR 249
L TCY+ NS L PD +PC+ D +CR
Sbjct: 799 LGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICR 837
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,694,480
Number of Sequences: 27780
Number of extensions: 147256
Number of successful extensions: 528
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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