Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G12
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   0.27 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   0.27 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    20   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.7  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 0.27
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 DSRCLLDKLPDSLRLPCEPKDTMCRKIS-QVVEFEMNGMP 291
           D+  L   LPD+L   C P     +KI+ +VV+F ++  P
Sbjct: 59  DAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNKP 98


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 0.27
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 DSRCLLDKLPDSLRLPCEPKDTMCRKIS-QVVEFEMNGMP 291
           D+  L   LPD+L   C P     +KI+ +VV+F ++  P
Sbjct: 59  DAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNKP 98


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 298 YRAASHSSRTPQPGRSSCT*CPSARMAAVMSP 203
           + + S +  +PQ   SS +  P+AR  + M P
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSPAARTTSSMYP 90


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 237 HYVQEDLPGCGV 272
           +Y++E LPG GV
Sbjct: 414 YYIEEYLPGNGV 425


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 151  CYQCNSHNDSRCLLDKL 201
            CY C S ND   +L  L
Sbjct: 1068 CYVCYSPNDEDFVLHSL 1084


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 193 LTSNESRCDYCTGNKLL 143
           L  N +RC YC   K +
Sbjct: 64  LRINRNRCQYCRLKKCI 80


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 193 LTSNESRCDYCTGNKLL 143
           L  N +RC YC   K +
Sbjct: 113 LRINRNRCQYCRLKKCI 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,910
Number of Sequences: 438
Number of extensions: 1719
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)