Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G11
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 56 1e-08
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 56 1e-08
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 56 1e-08
U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical p... 29 1.9
Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical p... 28 3.3
Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical pr... 27 5.7
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 5.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 5.7
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 27 5.7
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 27 5.7
AL132858-15|CAB60482.3| 300|Caenorhabditis elegans Hypothetical... 27 7.5
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 27 7.5
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81110-9|CAB03261.2| 353|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z81094-8|CAB03155.2| 353|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 26 10.0
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 56.0 bits (129), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = -2
Query: 376 ESKYLSILKEFPEITRPAGTNPVCTHNTVHYIKTTEGP-PVHCTPRRLAPDKLKIAKQEF 200
+ K ++++F ++ + T I+ EG P+ PR + ++
Sbjct: 989 DRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMI 1048
Query: 199 DAMLMNGTVRPSDSPWSSPLHLTPKKDGGWRPCGDYRQLNARTIPDRYPIRHIHDFTHNL 20
ML +R S SPWSSP+ L KKDG R C DYR++N + +P+ +I +L
Sbjct: 1049 QKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSL 1108
Query: 19 SGCRL 5
+G +L
Sbjct: 1109 AGKKL 1113
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 56.0 bits (129), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = -2
Query: 376 ESKYLSILKEFPEITRPAGTNPVCTHNTVHYIKTTEGP-PVHCTPRRLAPDKLKIAKQEF 200
+ K ++++F ++ + T I+ EG P+ PR + ++
Sbjct: 892 DRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMI 951
Query: 199 DAMLMNGTVRPSDSPWSSPLHLTPKKDGGWRPCGDYRQLNARTIPDRYPIRHIHDFTHNL 20
ML +R S SPWSSP+ L KKDG R C DYR++N + +P+ +I +L
Sbjct: 952 QKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSL 1011
Query: 19 SGCRL 5
+G +L
Sbjct: 1012 AGKKL 1016
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 56.0 bits (129), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = -2
Query: 376 ESKYLSILKEFPEITRPAGTNPVCTHNTVHYIKTTEGP-PVHCTPRRLAPDKLKIAKQEF 200
+ K ++++F ++ + T I+ EG P+ PR + ++
Sbjct: 903 DRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMI 962
Query: 199 DAMLMNGTVRPSDSPWSSPLHLTPKKDGGWRPCGDYRQLNARTIPDRYPIRHIHDFTHNL 20
ML +R S SPWSSP+ L KKDG R C DYR++N + +P+ +I +L
Sbjct: 963 QKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSL 1022
Query: 19 SGCRL 5
+G +L
Sbjct: 1023 AGKKL 1027
>U40797-14|AAB37544.2| 200|Caenorhabditis elegans Hypothetical
protein C28C12.1 protein.
Length = 200
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 184 NGTVRPSDSPWSSPLHLTPKK 122
NGT +P+ P SPL LTP K
Sbjct: 36 NGTPKPASQPALSPLDLTPAK 56
>Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 161 QPLVISTTPNAQKRWWLETMRRLSPAEC 78
+PL +S TPN +T+RRLSP C
Sbjct: 327 RPLFLSMTPNVSST--KDTLRRLSPGYC 352
>Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 161 QPLVISTTPNAQKRWWLETMRRLSPAEC 78
+PL +S TPN +T+RRLSP C
Sbjct: 327 RPLFLSMTPNVSST--KDTLRRLSPGYC 352
>Z83105-7|CAB05491.1| 432|Caenorhabditis elegans Hypothetical
protein F14H3.7 protein.
Length = 432
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 174 TVPFINIASNSCFAIFSLS--GARRRGVQCTGGPSVVLI*WTVLWVQTGLVPAG 329
T+ +AS C A ++ G R+ + C G + V+I +T V G P G
Sbjct: 340 TINICVVASAMCIAEPGMTNDGCDRQRISCQGSMACVIISYTATLVGGGTAPTG 393
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 52 SGICLELSSHSAGDSRRMVSS 114
SG C EL++ +AGD +M+SS
Sbjct: 949 SGGCYELTTKAAGDEYKMISS 969
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 52 SGICLELSSHSAGDSRRMVSS 114
SG C EL++ +AGD +M+SS
Sbjct: 5795 SGGCYELTTKAAGDEYKMISS 5815
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 337 ITRPAGTNPVCTHNTV--HYIKTTEGPPVHCTPRRLAPDKL 221
I P GT T+ H ++ TEG + C+P +A D L
Sbjct: 465 IQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHL 505
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 337 ITRPAGTNPVCTHNTV--HYIKTTEGPPVHCTPRRLAPDKL 221
I P GT T+ H ++ TEG + C+P +A D L
Sbjct: 465 IQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHL 505
>AL132858-15|CAB60482.3| 300|Caenorhabditis elegans Hypothetical
protein Y113G7A.10 protein.
Length = 300
Score = 26.6 bits (56), Expect = 7.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Frame = -2
Query: 394 VKTMT--GESKYLS-------ILKEFPEITRPAGTNPVCTHNTVHYIKTTEGPP 260
+KTM GE KYL I +FP+ T + T+N H KT GPP
Sbjct: 11 LKTMAENGEMKYLECYTTKEVIYDKFPKFTLEGEHTTIATYNITHESKT--GPP 62
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 334 TRPAGTNPVCT-HNTVHYIKTTEGPPVHCTPR 242
TRP T T T ++TT PP+ TPR
Sbjct: 383 TRPQTTKTTTTPQTTTTRLQTTRRPPIRVTPR 414
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 102 HGLQPPSFLGVRCSGDDQGLSEGLTV 179
H + PPS L V+C + Q L E LT+
Sbjct: 2956 HNIVPPSILLVKCYQELQQLKEELTM 2981
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 102 HGLQPPSFLGVRCSGDDQGLSEGLTV 179
H + PPS L V+C + Q L E LT+
Sbjct: 2965 HNIVPPSILLVKCYQELQQLKEELTM 2990
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
protein T28B8.3a protein.
Length = 1838
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 308 NRVSTCWTRDLWKLFQDAEV-F*FTRHCL 391
N V+T W ++LW+++ AE+ +T HCL
Sbjct: 202 NAVNT-WIKELWEMYLKAEMNTSWTAHCL 229
>Z81110-9|CAB03261.2| 353|Caenorhabditis elegans Hypothetical
protein T01D3.1 protein.
Length = 353
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 277 TTEGPPVHCTPRRLAPDKLKIAKQEFDAMLMNG 179
T PPV RR+ D I KQ+ D +M+G
Sbjct: 183 TPSTPPVTTRSRRVRRDVEDITKQDQDVQVMHG 215
>Z81094-8|CAB03155.2| 353|Caenorhabditis elegans Hypothetical
protein T01D3.1 protein.
Length = 353
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 277 TTEGPPVHCTPRRLAPDKLKIAKQEFDAMLMNG 179
T PPV RR+ D I KQ+ D +M+G
Sbjct: 183 TPSTPPVTTRSRRVRRDVEDITKQDQDVQVMHG 215
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 7 GGNLTNCE*NRVYDVSGICLELSSHSAGDSRRMVSSHHLF 126
GG+L+ E ++ D G L + + GD+ R +++ H F
Sbjct: 84 GGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGF 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,551
Number of Sequences: 27780
Number of extensions: 234465
Number of successful extensions: 647
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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