Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G11
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.3  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   4.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 199  DAMLMNGTVRPSDSPWSSPLHLTPK 125
            D+M      R  + PW   +H+TP+
Sbjct: 984  DSMKQQYGKRRKEPPWLEGVHVTPE 1008


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 305 HPQYSPLY*NYRGTSGTLYSTSSRT*QTKDSETGI 201
           HP Y+P +      S  ++S       T  S TGI
Sbjct: 6   HPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGI 40


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 327 GRVISGNSFKMLRYFDSPVIVFTEAIV 407
           G++I  +++KM+ Y  +PV+    A++
Sbjct: 308 GQMIYMDNWKMMMYLGTPVMPDLNALI 334


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 102 HGLQPPSFLG 131
           HGLQPP   G
Sbjct: 331 HGLQPPDLAG 340


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 273 VVLI*WTVLWVQTGLVPAGRVISG 344
           +V++ W   W++   +PA RV  G
Sbjct: 227 IVVMSWIAFWIKPEAIPA-RVTLG 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,638
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)