Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G10
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 245 9e-66
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 31 0.46
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 28 2.4
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 28 2.4
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 28 3.2
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 4.3
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 4.3
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 27 5.6
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 27 5.6
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 27 5.6
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 27 7.4
Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 26 9.8
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 245 bits (600), Expect = 9e-66
Identities = 110/132 (83%), Positives = 117/132 (88%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 389 KPQGTVARVRIG 424
KPQG VARV IG
Sbjct: 121 KPQGLVARVDIG 132
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 30.7 bits (66), Expect = 0.46
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 393 GFPNAPRIPVWSLSAPA 343
GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +3
Query: 216 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 311
RRWK+ V +AT+TS R+ V+ +STS TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 89 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 235
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 406 YCALGFPERTT-HPSLEPISSSARQHFIDA 320
Y +LG + T HP+L +SS R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 406 YCALGFPERTT-HPSLEPISSSARQHFIDA 320
Y +LG + T HP+L +SS R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 154 CRSLFAQVENTDLWVRHT--PTKPRFRIRFILTISITSRWSAPHCVL--HKATL 5
C A + NTD + T P +PRFR ++T T + HC + H AT+
Sbjct: 234 CEQNSATLPNTDQQLSPTLSPNEPRFRN--LITSEPTPSFECKHCTIKFHDATM 285
>Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical
protein ZK1053.4 protein.
Length = 667
Score = 26.2 bits (55), Expect = 9.8
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -2
Query: 236 YGLLPAPQNSA--ARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPDKTEI*DTVYSY 63
Y L P PQ S +H + S LS +CPSR + P TV++Y
Sbjct: 233 YSLYPPPQPSQQFVHSHNFHQPKFDASSMLSTGYCPSRNVATFKVDKPY-----GTVFTY 287
Query: 62 NIDN 51
+ N
Sbjct: 288 DHQN 291
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 314 HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQN 210
HG G GT R + +CCN +G L P N
Sbjct: 183 HGIGAFGGNKGTGYGR--VPSSCCNEHGKLSYPNN 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,293
Number of Sequences: 27780
Number of extensions: 233435
Number of successful extensions: 633
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -