Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G09
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 113 8e-27
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 4.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 4.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 4.5
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 4.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 4.5
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 7.9
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 24 7.9
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 7.9
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 24 7.9
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 113 bits (272), Expect = 8e-27
Identities = 51/84 (60%), Positives = 65/84 (77%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LF R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 279 TGKGLFKILEKYQAETEAVRKERL 350
T +FK+L KY+ ET A +K+RL
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRL 109
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 226 VSKCRRQSTSSPRH*IKPQAKVCSRSWRNTRQKLRQ 333
+S C + SS H + P A ++ RNT KL Q
Sbjct: 565 LSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQ 600
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 207 KAVLQRRLKVPPPINQFTQTLDKTTGKGLFKILE 308
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 83 EDCKPSIREENKELCY 130
E CK + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 217 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 119
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 220 SVVSKCRRQSTSSPRH*IKPQAKV 291
S V R Q+TSSP + ++PQ KV
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKV 205
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 92 YNLLGLNFLHHKW 54
YN GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 100 YSRREQRTLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSP 261
+SR E+ + S QP +S ++I +S + SV S R SP
Sbjct: 546 FSRLEELGENIPAISKQPSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLSP 599
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 337 LTASVSAWYFSKILNRPLPVVLS-NVWVN 254
+T + Y+ K LN PLP+ VW++
Sbjct: 1740 MTVTTKKEYYKKFLNEPLPMESHLQVWLH 1768
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 182 EIYSHPASKGCVTASSQSA 238
E++SHP GC + SS +
Sbjct: 251 EVFSHPFLMGCTSLSSMDS 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,002
Number of Sequences: 5004
Number of extensions: 26016
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -