Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G09
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 111 1e-25
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 111 1e-25
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 4e-22
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 31 0.26
05_07_0197 - 28357739-28358155 30 0.45
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.1
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 29 1.1
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 28 1.8
10_08_0178 - 15475614-15475850,15476716-15476808 28 2.4
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 3.2
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829... 27 4.2
02_01_0433 + 3153802-3154064,3154149-3154713 27 4.2
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 4.2
04_03_0545 + 16996340-16996418,16998039-16998142,16999796-169999... 27 5.6
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 5.6
09_04_0407 + 17345382-17345579,17345711-17346235 26 7.4
09_04_0320 - 16656620-16657243,16658198-16659106 26 7.4
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389... 26 9.8
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 26 9.8
02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383 26 9.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 111 bits (268), Expect = 1e-25
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 279 TGKGLFKILEKYQAETEAVRKERL 350
LFK+L KY+ E +A +KERL
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERL 107
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 111 bits (268), Expect = 1e-25
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 279 TGKGLFKILEKYQAETEAVRKERL 350
LFK+L KY+ E +A +KERL
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKERL 91
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (239), Expect = 4e-22
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 279 TGKGLFKILEKYQAETEAVRKERLK 353
G ++L++ QAE E E K
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEAKK 109
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 31.1 bits (67), Expect = 0.26
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 183 KYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTGKGLFKIL-EKYQAETEAVRKERL 350
K +R+Q + L ++ P I + L + GKGLF +L E+Y A + KE++
Sbjct: 31 KILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGKGLFDVLREQYGAGFNSFIKEKI 87
>05_07_0197 - 28357739-28358155
Length = 138
Score = 30.3 bits (65), Expect = 0.45
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 129 IGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTGKGLFKIL 305
+G+ + D++ +V+ P+ I+ + K V + L + PP+N+ TTGK FK L
Sbjct: 67 VGKHVSYDADITGYVK-PRCIK--KLKGVKAKELMLWPPVNEIAVDEPSTTGKIHFKSL 122
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 120 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 245
N +GQD + ++ +V+ Y I Q+ + +L RLK PP
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 183 KYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTGKGLFKIL-EKYQAETEAVRKERL 350
K +R+Q + L ++ P I + L + G GLF +L E+Y A + KE++
Sbjct: 31 KILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHSFIKEKI 87
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 222 RRLKVPPPINQFTQTLDKTTGKGLFKILEKY-QAETEAVRKERL 350
+R P PIN +K K L +ILEK+ Q E + +++E++
Sbjct: 90 QRTSKPVPINSTMNKEEKWLDKALDRILEKFEQMEAKRMQEEKI 133
>10_08_0178 - 15475614-15475850,15476716-15476808
Length = 109
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 177 WPKYIRIQRQKAVLQ-RRLKVPPPINQFTQTLDKTTG 284
W Y + RQKAV + R++ PPP +T+ + G
Sbjct: 4 WGAYTEVARQKAVGRGRKVAAPPPNFPLVKTMPRLLG 40
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 143 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 250
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_02_0450 -
10381360-10381391,10381737-10382283,10382770-10382952,
10383123-10383863
Length = 500
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 222 RRLKVPPPINQFTQTLDKTTGKGLFKILEKY-QAETEAVRKERL 350
+R P PIN +K K L +ILEK+ Q E + +++E++
Sbjct: 47 QRTSKPVPINSTMNKEEKWLDKVLDRILEKFEQMEAKRMQEEKI 90
>02_01_0433 + 3153802-3154064,3154149-3154713
Length = 275
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 198 QRQKAVLQRRLKVPPPINQFTQTLDKTTGKGLFKILEKY-QAETEAVRKE 344
Q + + +R P PIN +K K L +ILEK+ Q E + +++E
Sbjct: 39 QSEMSKEDQRTSKPVPINSTMNKEEKWLDKSLDRILEKFEQMEAKRMQEE 88
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 83 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 238
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>04_03_0545 +
16996340-16996418,16998039-16998142,16999796-16999995,
17000186-17000228
Length = 141
Score = 26.6 bits (56), Expect = 5.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 183 KYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTGKGLFKIL-EKYQAETEAVRKERL 350
K +RIQ L ++ P + L + GKGLF +L E++ A + KE++
Sbjct: 31 KILRIQPDVRKLYLLVRAPDAAAAKERLLTEVVGKGLFDVLREQHGASFHSFIKEKV 87
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 209 LLTLDANIFRPSHETG*ISGWL 144
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 KPSIREENKELCYWP--GHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQP 253
K S+ EE K G A+ S F ++ +S S+G ASS AA + P
Sbjct: 113 KESVTEEEKTTGKEEEVGGDADDESEAFFSVKSFFSRSTSRGATVASSAFAAVDPP 168
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 173 AMAEIYSHPASKGCVTASSQSAAANQPVHPD 265
AMAE+ HPA+ A + A +P HPD
Sbjct: 320 AMAELLRHPAAMSRARAELRDALGAKP-HPD 349
>07_03_0856 -
22037345-22037665,22037962-22038108,22038201-22038978,
22039092-22039384,22039663-22039758
Length = 544
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 138 DIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 236
DI P +LSRF+R +Y+ + +RR++V
Sbjct: 91 DIVPQTELSRFLRAHEYVFFKPSLCSWKRRVRV 123
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 95 PSIREENKELCYWPGHPAN 151
P E N ++C W GHP N
Sbjct: 90 PVDHEINSKICLWRGHPWN 108
>02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383
Length = 488
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 214 CYSVVSKCRRQSTSSPRH*IKPQAKVCSRSWRNTRQKLRQSGKSV 348
C ++ C R +P H + VC+R + LR++ SV
Sbjct: 321 CVEALNSCVRAEVQAPEHVKRLLGDVCTRLASQCARVLREASTSV 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,268,500
Number of Sequences: 37544
Number of extensions: 184547
Number of successful extensions: 640
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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