Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G09
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 119 7e-28
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 119 7e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 115 1e-26
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 3e-22
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 32 0.13
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 32 0.13
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 32 0.13
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 32 0.13
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 2.8
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 5.0
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 8.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 8.7
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 119 bits (286), Expect = 7e-28
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 279 TGKGLFKILEKYQAETEAVRKERLK 353
+ + FK+L+KY+ E+ +K RL+
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLR 219
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 119 bits (286), Expect = 7e-28
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 279 TGKGLFKILEKYQAETEAVRKERLK 353
+ + FK+L+KY+ E+ +K RL+
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLR 116
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 115 bits (276), Expect = 1e-26
Identities = 50/81 (61%), Positives = 64/81 (79%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 279 TGKGLFKILEKYQAETEAVRK 341
+ + FK+L+KY+ E+ V K
Sbjct: 92 SARQAFKLLDKYRPESTEVTK 112
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 3e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +3
Query: 99 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 278
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 279 TG 284
+G
Sbjct: 195 SG 196
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +2
Query: 29 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 208
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 209 GCVTASSQSAAANQPVHPDIR*NHRQRSVQDLGEIPGRN*GSQE 340
G AS+Q++ A+ P++ + + QD+ + G + S +
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQ 132
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +2
Query: 29 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 208
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 209 GCVTASSQSAAANQPVHPDIR*NHRQRSVQDLGEIPGRN*GSQE 340
G AS+Q++ A+ P++ + + QD+ + G + S +
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQ 169
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +2
Query: 29 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 208
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 209 GCVTASSQSAAANQPVHPDIR*NHRQRSVQDLGEIPGRN*GSQE 340
G AS+Q++ A+ P++ + + QD+ + G + S +
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQ 169
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +2
Query: 29 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 208
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 209 GCVTASSQSAAANQPVHPDIR*NHRQRSVQDLGEIPGRN*GSQE 340
G AS+Q++ A+ P++ + + QD+ + G + S +
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQ 169
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 154 LVGWMSWPIAKF--FVLFSNRGFTIF 83
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 214 CYSVVSKCRRQSTSSPRH*IKPQAKVCSRSWRNTRQKLRQ 333
C VS+C++Q + PQ + C S + T+Q +Q
Sbjct: 212 CQQAVSQCQQQCAPQCQQPSAPQCQQCQSSCQQTQQCQQQ 251
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 IRIQRQKAVLQRRLK-VPPPINQFTQTLDKTTGKGLFKILEKYQAETEAVR 338
+RI+ QKA + +LK V P I++ + + + L +I +A EAVR
Sbjct: 2860 VRIEEQKAKIDEQLKEVQPLIDEARRAVGSIKSESLSEI-RSLRAPPEAVR 2909
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 166 VSCDGRNIFASSVKRLCYSVVSKC 237
V C +N+F + R C+ V KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 166 VSCDGRNIFASSVKRLCYSVVSKC 237
V C +N+F + R C+ V KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,538,016
Number of Sequences: 27780
Number of extensions: 144499
Number of successful extensions: 417
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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