Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G09
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.46 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.46 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 116 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 244
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 116 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 244
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 86  DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 178
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 86  DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 178
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 188  YSHPASKGCVTASSQSAAANQPV 256
            Y H  S+G V   S  +A N PV
Sbjct: 1831 YDHYGSRGSVGRRSVGSARNIPV 1853



 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 207 KAVLQRRLKVPPPINQFTQT 266
           +  L+ ++ VPP I QF+ T
Sbjct: 572 RGTLEVQVMVPPTIQQFSFT 591


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 304 KILNRPLPVVLSNVW 260
           K  N+ LPV L+ +W
Sbjct: 549 KFKNKKLPVFLAEIW 563


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 162 IDLWLAGC 139
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 343 SFLTASVSAWYFSKIL 296
           SF+ +++  W+ +KI+
Sbjct: 397 SFIVSTILLWFINKII 412


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 271 IKPQAKVCSRSW 306
           ++P+ K C RSW
Sbjct: 393 MQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 271 IKPQAKVCSRSW 306
           ++P+ K C RSW
Sbjct: 393 MQPRKKNCCRSW 404


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 98  RVYNLLGLNFLHHKWSG 48
           R++NL+ +  L   WSG
Sbjct: 278 RIFNLICMMLLIGHWSG 294


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 98  RVYNLLGLNFLHHKWSG 48
           R++NL+ +  L   WSG
Sbjct: 246 RIFNLICMMLLIGHWSG 262


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 239 AANQPVHPDI 268
           A N P HPDI
Sbjct: 375 AQNHPQHPDI 384


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 128  YWPGHPANQRSIPFRAMAEIYSHPASK 208
            Y P  PAN +    +A A+  S  A+K
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANK 1023


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,274
Number of Sequences: 438
Number of extensions: 1697
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)