Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G08
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   0.51 
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    26   2.1  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   3.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   4.8  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   4.8  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    24   6.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   6.3  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 75   VVHSVAVYEEALSALRR--VFGRSSLHVATAQEDLAYA-LYVLEYSSGRFYKAKDHAERA 245
            + H +   EEA+   R+  +     L   +++  LAY  L + E+S     +A  H + A
Sbjct: 993  IYHQLEKKEEAVELARKAVIVCERFLGFDSSETSLAYMNLSLYEFSQKNEMQAVMHMQHA 1052

Query: 246  IRIIENLVPPDHP 284
            +++   +  PDHP
Sbjct: 1053 LKLWYLVFGPDHP 1065


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 134 PEHAAERRQRLLVDGDTVHN 75
           PE AAE++QRL+ + + V N
Sbjct: 99  PETAAEKKQRLVAEAEAVAN 118


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 198 YSSGRFYKAKD-HAERAIRIIENLVPPD 278
           Y SGR+YK +D   E+   +IE  +P +
Sbjct: 351 YRSGRYYKVRDLMREKLFALIEGEMPSE 378


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 87  VAVYEEALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRF 215
           V++ ++ +   +++     + +A A ED+ + LY + Y  G+F
Sbjct: 591 VSLEKDDIEYAKQIVEDRLMTLAEASEDVKFFLYEIAYKIGKF 633


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 168 DLAYALYVLEYSSGRFYKAKDHAERAIRIIENLV 269
           D    + ++  S G F++  DH   AIR IE+ V
Sbjct: 6   DYTLGVEMIPLSMGEFFEEIDHIRDAIRQIEDNV 39


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 201 SSGRFYKAKDHAERAIRIIENLVP 272
           S+  FY   D   RA+R IEN  P
Sbjct: 253 SASSFYLPLDRVVRALRCIENNTP 276


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 3   LQEFGTRHAAALL-DYGFYLLNIDCVVHS 86
           +Q      AA+LL D   YL N DC+VH+
Sbjct: 69  VQRKDNEDAASLLEDKEAYLRNQDCIVHA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,329
Number of Sequences: 5004
Number of extensions: 15457
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)