Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G08
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0087 - 10983528-10984114,10984578-10985160 29 0.85
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 1.1
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240... 29 1.1
12_02_0779 + 23082577-23082903,23083347-23083543,23084346-230844... 29 1.5
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 27 3.4
12_01_0849 + 7948693-7948996,7949829-7950610 27 4.5
04_04_0316 - 24338774-24339367 27 4.5
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 27 4.5
02_02_0259 - 8379640-8380209 27 4.5
05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057 27 6.0
02_01_0370 + 2659704-2660012,2660318-2660488,2660981-2661058,266... 27 6.0
06_03_0322 - 19560242-19560671,19560833-19561122 26 7.9
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 26 7.9
>04_03_0087 - 10983528-10984114,10984578-10985160
Length = 389
Score = 29.5 bits (63), Expect = 0.85
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 205 PAGSTRRRTTPSAPSGS*RIWYRLITLL 288
P S+R R P P G R WY L+TLL
Sbjct: 360 PGESSRWRHKPLGPKGLRRCWYFLMTLL 387
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 141 SLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIR-IIENLVPPDHPAVGFSETREGA 317
S AT Q+ L Y S G+FY+ + AIR +L P P V F ++
Sbjct: 767 SFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRH 826
Query: 318 HTRGNSAGHARRT 356
HTR + H R+
Sbjct: 827 HTRLFANNHKDRS 839
>05_05_0092 -
22323049-22323224,22323840-22323887,22323962-22324016,
22324260-22324360,22324457-22324518,22324683-22324881,
22325107-22325254,22325331-22325377,22325928-22325995,
22326428-22326542,22326657-22326816
Length = 392
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 204 SGRFYKAKDHAERAIRIIENLVPPDHPAVG 293
SG+F +A+D+ RA++ E+ +HP VG
Sbjct: 245 SGKFSEAEDYLTRALKKAEDQFGANHPKVG 274
>12_02_0779 +
23082577-23082903,23083347-23083543,23084346-23084481,
23084558-23084794,23084885-23085108,23085434-23085551,
23086080-23086319,23086423-23086673,23088397-23088484,
23088576-23088727,23089670-23089811
Length = 703
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 65 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGG 169
++ C R+ R A PP VRA A G G GG
Sbjct: 6 YKYCMCFTRKFRSPAADPPPDVRAAFLAAGGGDGG 40
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +2
Query: 98 RGGAVG----APPRVRAQQPARGDGAGGPXXXXXXXXXXXXXXXXGEGPRRA 241
RG AVG APP +AQQ RG G GG GPR A
Sbjct: 86 RGMAVGTRLPAPP-TKAQQRQRGIGCGGASCSGGGASSSPRGMTVAAGPRLA 136
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 56 PAEHRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGGP 172
P C + RRLR ++ PP R+ PAR A P
Sbjct: 319 PLHPNPACVRYRRLRSSSLTTPPVGRSSLPARRLAAPPP 357
>04_04_0316 - 24338774-24339367
Length = 197
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 62 EHRLCCAQCRRLRGGAVGAPPRVRAQQP 145
EH L C +CR+ P R R QQP
Sbjct: 83 EHGLSCPECRKKARSVRVLPWRARPQQP 110
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -2
Query: 239 LGVVLRLVEPAGGXXXXXXXXXXXXXXXXXXQAAAPEHAAERRQRLL 99
LG +LRL+ GG AAA + AAE R LL
Sbjct: 2 LGALLRLLSACGGVWPTSPAPPARSSSSSSAAAAADQAAAEGRDGLL 48
>02_02_0259 - 8379640-8380209
Length = 189
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 77 CAQCRRLRGGAVGAPPRVRAQQPARGDGAGG 169
CA C L G A+ A P +PA DG GG
Sbjct: 72 CATCG-LVGAAIDALPAFAYARPAADDGGGG 101
>05_03_0082 + 8252844-8253035,8253517-8253792,8253905-8254057
Length = 206
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 254 HRESGTA*SPCCWLQRNA*RRSYSRK*RWTRPPDR 358
HR GT S CC+ RR + RWT P++
Sbjct: 68 HRPLGTTPSSCCYSSSPRHRRRELQCNRWTPGPEQ 102
>02_01_0370 +
2659704-2660012,2660318-2660488,2660981-2661058,
2661658-2661803,2662001-2662112,2662280-2662405,
2662618-2662731
Length = 351
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 81 HSVAVYEEALSALRRVFGRSSLH 149
+SV EEA A+RR+ G+S H
Sbjct: 326 YSVETLEEAKEAIRRILGKSRWH 348
>06_03_0322 - 19560242-19560671,19560833-19561122
Length = 239
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 65 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGGP 172
HR CC RRL GA+ R A G GGP
Sbjct: 181 HRWCCHIGRRLAAGALVLQGLRRRGIGAMAVGVGGP 216
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 56 PAEHRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAG 166
PA+ CCA RLR P P GDG G
Sbjct: 197 PADLLQCCAALERLRVCVWRFPATAGVLHPGGGDGDG 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,766,393
Number of Sequences: 37544
Number of extensions: 163502
Number of successful extensions: 640
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -