Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_G08
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light c... 32 0.11
Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light c... 32 0.11
U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light ... 32 0.11
U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light ... 32 0.11
U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light ... 32 0.11
U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light ... 32 0.11
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 3.0
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 3.0
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 27 5.3
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 27 5.3
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 27 5.3
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 27 5.3
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 26 7.0
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 26 9.3
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 26 9.3
>Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light
chain (isoform 2) protein.
Length = 522
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 294 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 349
Query: 282 PAV 290
P V
Sbjct: 350 PDV 352
>Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light
chain (isoform 1) protein.
Length = 540
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 273 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 328
Query: 282 PAV 290
P V
Sbjct: 329 PDV 331
>U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light
chain protein 2,isoform b protein.
Length = 540
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 273 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 328
Query: 282 PAV 290
P V
Sbjct: 329 PDV 331
>U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light
chain protein 2,isoform c protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 273 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 328
Query: 282 PAV 290
P V
Sbjct: 329 PDV 331
>U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light
chain protein 2,isoform a protein.
Length = 522
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 294 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 349
Query: 282 PAV 290
P V
Sbjct: 350 PDV 352
>U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light
chain protein 2,isoform d protein.
Length = 531
Score = 32.3 bits (70), Expect = 0.11
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +3
Query: 102 EALSALRRVFGRSSLHVATAQEDLAYALYVLEYSSGRFYKAKDHAERAIRIIENLVPPDH 281
EALS + G S VA +LA VL G+F A+ +RA+ I E ++ DH
Sbjct: 273 EALSIREKCLGESHPAVAATLNNLA----VLFGKRGKFKDAEPLCKRALEIREKVLGDDH 328
Query: 282 PAV 290
P V
Sbjct: 329 PDV 331
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 65 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGG 169
+R C +C + AV PPR+ +P G GG
Sbjct: 729 NRQCSHECHESKATAVCDPPRIDKFEPTSGPIEGG 763
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 65 HRLCCAQCRRLRGGAVGAPPRVRAQQPARGDGAGG 169
+R C +C + AV PPR+ +P G GG
Sbjct: 731 NRQCSHECHESKATAVCDPPRIDKFEPTSGPIEGG 765
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 74 CCAQCRRLRGGAVGAPPRVRAQQPARGD 157
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 74 CCAQCRRLRGGAVGAPPRVRAQQPARGD 157
C + C R R A PP + QP GD
Sbjct: 314 CSSSCHRYRTRACTVPPPMNGGQPCFGD 341
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 74 CCAQCRRLRGGAVGAPPRVRAQQPARGD 157
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 74 CCAQCRRLRGGAVGAPPRVRAQQPARGD 157
C + C R R A PP + QP GD
Sbjct: 286 CSSSCHRYRTRACTVPPPMNGGQPCFGD 313
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 101 GGAVGAPPRVRAQQPARGDGAG 166
GG G PPR QQP + G G
Sbjct: 16 GGGGGGPPRGPPQQPPQPQGGG 37
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 101 GGAVGAPPRVRAQQPARG---DGAGGP 172
GGA GA + +A QP+RG GAG P
Sbjct: 762 GGAPGARAQQQAYQPSRGAAGAGAGAP 788
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 101 GGAVGAPPRVRAQQPARG---DGAGGP 172
GGA GA + +A QP+RG GAG P
Sbjct: 782 GGAPGARAQQQAYQPSRGAAGAGAGAP 808
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,231,669
Number of Sequences: 27780
Number of extensions: 97917
Number of successful extensions: 288
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -