Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G07
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0757 + 31539660-31540859                                         30   0.94 
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   2.9  
01_01_0088 + 688792-691441,691629-693013                               29   2.9  

>02_05_0757 + 31539660-31540859
          Length = 399

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 327 LMADSDRLRTGEDWNFW---KALEKVITRNKNYKK 232
           L   S+RL    DWN+W     LEKV+  N ++ K
Sbjct: 170 LFGSSERLLQASDWNYWLLTSDLEKVVEPNVSFLK 204


>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 226  SGFLVILVACDNFF*CFPKIPVFPCSQTITIGHQDSSE-PSRCPLSYIKFFQ 378
            SGFL+      N F CFP + V   S +     +   + PS C L  I+ F+
Sbjct: 1472 SGFLLTRKMLSNLFRCFPALYVLSMSPSKESHEEVKLQIPSSCSLKTIRLFK 1523


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 226  SGFLVILVACDNFF*CFPKIPVFPCSQTITIGHQDSSE-PSRCPLSYIKFFQ 378
            SGFL+      N F CFP + V   S +     +   + PS C L  I+ F+
Sbjct: 1028 SGFLLTRKMLSNLFRCFPALYVLSMSPSKESHEEVKLQIPSSCSLKTIRLFK 1079


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,829
Number of Sequences: 37544
Number of extensions: 167765
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)