Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G07
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    31   0.64 
Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical p...    29   2.6  
AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 232 IPN*YR-ILKSYHTQSIKVDLLQFLIQ--PKRRLKQKRVITPFHQDSRSIYQIIDQIHKK 62
           IPN Y  I     T   +  LL  +    PK+ +K K ++  +HQ+++ I +I+   H K
Sbjct: 147 IPNQYNPIAHPDRTIEFRQRLLDLMTSSFPKKSIKSKSLVIHWHQETQEIAEILQVFHTK 206


>Z70270-11|CAJ80821.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 181 VDLLQFLIQPKRRLKQ--KRV--ITPFHQDSRSIYQIIDQIHKKEEPIHKDFVKKKYI 20
           +D++  +  P RR+K    RV  ITP      ++Y ++D +HK  +  + +F+  +++
Sbjct: 308 LDMVIGINHPLRRMKSFSDRVKDITPDGMIDENVYGLVDAVHKHNKDANANFLSPRFM 365


>Z70270-10|CAA94231.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 181 VDLLQFLIQPKRRLKQ--KRV--ITPFHQDSRSIYQIIDQIHKKEEPIHKDFVKKKYI 20
           +D++  +  P RR+K    RV  ITP      ++Y ++D +HK  +  + +F+  +++
Sbjct: 308 LDMVIGINHPLRRMKSFSDRVKDITPDGMIDENVYGLVDAVHKHNKDANANFLSPRFM 365


>Z68215-18|CAJ80818.1|  606|Caenorhabditis elegans Hypothetical
           protein C53B4.8b protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 181 VDLLQFLIQPKRRLKQ--KRV--ITPFHQDSRSIYQIIDQIHKKEEPIHKDFVKKKYI 20
           +D++  +  P RR+K    RV  ITP      ++Y ++D +HK  +  + +F+  +++
Sbjct: 308 LDMVIGINHPLRRMKSFSDRVKDITPDGMIDENVYGLVDAVHKHNKDANANFLSPRFM 365


>Z68215-17|CAA92458.1|  726|Caenorhabditis elegans Hypothetical
           protein C53B4.8a protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 181 VDLLQFLIQPKRRLKQ--KRV--ITPFHQDSRSIYQIIDQIHKKEEPIHKDFVKKKYI 20
           +D++  +  P RR+K    RV  ITP      ++Y ++D +HK  +  + +F+  +++
Sbjct: 308 LDMVIGINHPLRRMKSFSDRVKDITPDGMIDENVYGLVDAVHKHNKDANANFLSPRFM 365


>AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical
           protein Y69E1A.8 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 351 TARGFTRILMADSDRLRTGEDWNFWKALEKVITRNKN 241
           TAR F+ I ++    L TGE W+   + E  +   KN
Sbjct: 300 TARSFSNISLSTHHDLVTGESWSAPTSTEATVVAPKN 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,673,197
Number of Sequences: 27780
Number of extensions: 177439
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)