Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G07
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 178 DLLQFLIQPKRRLKQKRVITPFHQDSRSIYQIIDQI 71
           D LQ  IQP+ +L   +V + +H++ +S+   + ++
Sbjct: 468 DTLQ--IQPQEQLTLSKVTSNYHEEFQSLNNAVGEM 501


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 283 IPVFPCSQTITIGHQDSSEPSRCPL 357
           + +F    TI  GH D  +PS  PL
Sbjct: 48  VEIFDGRGTIFEGHDDREQPSVYPL 72


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 163 KTVINQPLLIECDNFLIFDINSGFLVILVACDNF 264
           + V+N  L +E  NF I   N   L+    C NF
Sbjct: 384 QNVLNNDLNLEHVNFQILGANVNDLIRNSRCANF 417


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 249 NKNYKKSRINIEY 211
           N NYKK   NI Y
Sbjct: 320 NNNYKKLYYNINY 332


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 249 NKNYKKSRINIEY 211
           N NYKK   NI Y
Sbjct: 345 NNNYKKLYYNINY 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,219
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)