Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G06
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    31   0.36 
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177...    31   0.47 
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    28   4.4  
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950     27   5.8  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    27   7.7  

>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 291 LHDAMQMATELNNYNDPNFVENMQQNNMHQREVVAAEPVIRH 416
           + + M M    N  N+P+ + NM  NN   R+++   P + H
Sbjct: 172 MREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAH 213


>03_01_0224 -
           1771582-1771727,1771855-1771980,1772489-1772517,
           1772689-1772747,1772816-1772929,1773030-1773238,
           1773347-1774087,1775678-1776238,1776295-1776419,
           1778187-1778317,1779020-1779178,1779471-1779728,
           1780140-1780164,1780531-1780592,1780944-1781003,
           1781112-1781219,1781703-1781838,1781880-1781929,
           1782024-1782096,1782209-1782345,1782441-1782527,
           1782624-1782721,1783259-1783369,1783685-1783769,
           1783880-1783969
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 291 LHDAMQMATELNNYNDPNFVENMQQNNMHQREVVAAEPVIRH 416
           + + M M    N  N P+ + N+  NN   RE+V   P + H
Sbjct: 873 MREIMNMPLMQNILNSPDLIRNIIMNNPQMREIVDRNPDLAH 914


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 383 TLMHVVLLHIFNKIRIIVIIQLCSHLHSIVKFFMACSCVGNG 258
           TL+   +  IF  I ++V+I +   L +++KFF A S VG+G
Sbjct: 346 TLLSQYISLIF--IGMLVVISVRGFLANVMKFFFAVSRVGSG 385


>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
          Length = 369

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +3

Query: 387 VVAAEPVIRHHCQCLH-HC 440
           VVA +P   HHC+ +H HC
Sbjct: 130 VVAVDPAAFHHCRAVHPHC 148


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = +3

Query: 129 HMDPIAVLQSRIEQLEAKLGLNPSSEDGEKGD---SATLNLXXXXXXXXXXXXGHEKLHD 299
           H DP+  +   +  ++  L + PS +DG   D      ++                   +
Sbjct: 53  HTDPLVQIPGDMSHMDVDLRVIPSLKDGGHADPPVQVPVDKRIASLEKLCKEASRSFFRE 112

Query: 300 AMQMATELNNYNDPNFVENMQQNNMHQREVVAAEP 404
              ++ ++N+YND  FV +  Q      + V  EP
Sbjct: 113 TRLVSHQINSYND--FVSHGLQKMFDSLDEVTVEP 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,046,388
Number of Sequences: 37544
Number of extensions: 188576
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)