Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G06
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    29   1.7  
AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    28   3.9  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    27   6.9  
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.1  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    27   9.1  

>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -3

Query: 416 MTYYRFCSNHFTLMHVVLLHIFNKIRIIVIIQLCSHLHSIVKFFMACSCVGNGLSSV--- 246
           +++   C N    + V     F K   I +I   + +  + + F+A  C  + LS +   
Sbjct: 14  LSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVA--CFHSSLSIIFGR 71

Query: 245 YQIQSCRITLFSIF*TWV 192
           Y +   RI  FS+F  W+
Sbjct: 72  YVLSGARINSFSVFLGWI 89


>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 325 FSSVAICIAS*SFSWPVVALVMA*AVFIRFRVAESPF---SPSSELGFNPNFASNCSILL 155
           F S A C+AS  +  PV    +  AV+    V  S F    P++ + F P F   C  LL
Sbjct: 257 FVSFAPCLAS--WYQPVFGFELGRAVYHTSSVLVSAFPFFDPTAIIFFVPTFRKRCKELL 314

Query: 154 C 152
           C
Sbjct: 315 C 315


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 285 EKLHDAMQMATE-LNNYNDPNFVENMQQNNMHQREVVAAEPVIRHHCQCLHHCKQNAPVL 461
           +K+ D   M +E + NY+ PNF+ N+Q   + Q ++ A     R    CL  C +  P +
Sbjct: 530 KKIQDKTVMHSEKVENYS-PNFIRNLQL--LSQLQLSADVKRTRALSTCLFACVEQIPYI 586

Query: 462 E 464
           +
Sbjct: 587 K 587


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -3

Query: 416 MTYYRFCSNHFTLMHVVLLHIFNKIRIIVIIQLCSHLHSIVKFFMACSCVGNGLSSV--- 246
           +++   C N    + V     F K   I +I   + +  +++ F+A  C  + LS +   
Sbjct: 14  LSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVA--CFHSSLSIIFGR 71

Query: 245 YQIQSCRITLFSIF*TWV 192
           Y +   RI   S+F  W+
Sbjct: 72  YVLTGARINNLSVFFGWI 89


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 123 ILHMDPIAVLQSRIEQLEAKLGLNPSSEDGEKGDS 227
           ++H+  + +L SRIE  +A LGL  ++ D + G S
Sbjct: 135 VVHLVTMMILLSRIEDRKAVLGLFNAAYDLQHGQS 169


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 123 ILHMDPIAVLQSRIEQLEAKLGLNPSSEDGEKGDS 227
           ++H+  + +L SRIE  +A LGL  ++ D + G S
Sbjct: 135 VVHLVTMMILLSRIEDRKAVLGLFNAAYDLQHGQS 169


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 123 ILHMDPIAVLQSRIEQLEAKLGLNPSSEDGEKGDS 227
           ++H+  + +L SRIE  +A LGL  ++ D + G S
Sbjct: 135 VVHLVTMMILLSRIEDRKAVLGLFNAAYDLQHGQS 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,097
Number of Sequences: 27780
Number of extensions: 185095
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)