Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G05
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   138   2e-33
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   4.2  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    27   5.5  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    27   5.5  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    27   5.5  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    27   9.7  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   9.7  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   9.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  138 bits (335), Expect = 2e-33
 Identities = 65/132 (49%), Positives = 92/132 (69%)
 Frame = +3

Query: 93  SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 272
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 273 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPNVRKVLQLFRLRQINNGVFVRLNK 452
            +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ P  RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 453 ATVNMLRIAEPY 488
           AT+ +LRI EPY
Sbjct: 124 ATLPLLRIIEPY 135


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +1

Query: 190 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 282
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
            morphology protein1, isoform a protein.
          Length = 1117

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 467  HVHCGLVETNEHAVVDLTQPEQLQYLAY 384
            HV+  LV  N H+V DL     L  LAY
Sbjct: 1041 HVYGQLVSNNIHSVSDLANTSHLDLLAY 1068


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
            morphology protein1, isoform b protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 467  HVHCGLVETNEHAVVDLTQPEQLQYLAY 384
            HV+  LV  N H+V DL     L  LAY
Sbjct: 1046 HVYGQLVSNNIHSVSDLANTSHLDLLAY 1073


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
            tyrosine kinase protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 467  HVHCGLVETNEHAVVDLTQPEQLQYLAY 384
            HV+  LV  N H+V DL     L  LAY
Sbjct: 1046 HVYGQLVSNNIHSVSDLANTSHLDLLAY 1073


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 174 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 350
           ++LK    ++KK +E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 351 RIRGVNQVSPNVRKVL 398
             +G  ++   +  +L
Sbjct: 61  LTKGTMELMAEIHVML 76


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 RSHSRGVPLPLRRGKKSLREPNNMSKN 252
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 RSHSRGVPLPLRRGKKSLREPNNMSKN 252
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 RSHSRGVPLPLRRGKKSLREPNNMSKN 252
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 302 PWQLLCAR*S*TSICHPYSWCQPSITQCTQGI 397
           PW L     S  ++  P+ W  P I QC  G+
Sbjct: 465 PWMLAAVAESVCALMFPFHWQCPYIPQCPLGL 496


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 228  RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 359
            R +Q VKE  I++R   +LA       NY +    ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 278 DFITL-LDAVFFDILFGSLKDFFPLLNGS 195
           DF++L     FF ILFG+  +F  L+NG+
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGT 323


>Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical
           protein F29C12.5 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 LLNGSGTPLECDLKTASSECL 147
           L+ GSG P+E  L  A  ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 228  RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 359
            R +Q VKE  I++R   +LA       NY +    ++ FV+ ++
Sbjct: 1149 RMKQNVKEECIRQRFMSKLAPIIHRLDNYSIEARVRIIFVLSVK 1192


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 151  HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQDR 294
            H  L  F SH+  +   ++RG  +  + N+  + +  +SVM   + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 151  HSELAVFRSHSRGVPLPLRRGKKSLREPNNMSKNTASRSVMKSDWQDR 294
            H  L  F SH+  +   ++RG  +  + N+  + +  +SVM   + +R
Sbjct: 1427 HRSLLTFTSHAIRLECDIKRGFATFSDANSSHRFSIIQSVMNQSFNNR 1474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,963,538
Number of Sequences: 27780
Number of extensions: 221058
Number of successful extensions: 754
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)