Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G04
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   3.3  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    28   5.7  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   5.7  
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483...    27   7.5  
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927     27   10.0 
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    27   10.0 

>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 511 RRQGHPTQYCRDRGHQPGPNRR 446
           RR+ H  ++ R RG QP PNRR
Sbjct: 27  RRRRHHQRHRRRRGGQPAPNRR 48


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 360 VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 220
           V++A ++   L  +   E I  N L  +D +LDN+TL+  ++ +  M
Sbjct: 299 VDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 186 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 296
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


>11_01_0607 -
           4837257-4837447,4837526-4837631,4837913-4838005,
           4838405-4838542,4838651-4838778,4838889-4839049,
           4839145-4839235,4841437-4841602
          Length = 357

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 8   GALVLFSPTTTTFQLLPVSMENSTILH-TVALSLDLPVAVSPVKYLMFTLL 157
           G   LF P T  F L+  +  ++ I +   AL       VSP+ Y+MFT L
Sbjct: 199 GVNQLFYPQTWAFALIVATCVSTQINYLNKALDTFNTAVVSPIYYVMFTSL 249


>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
          Length = 229

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 303 SARMGNYRSMRQCI*RQPPQARTHCDQQRKLQG 401
           SAR    R     I  +PP  R HC+++R+++G
Sbjct: 86  SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 306  QINKNTLGYYDTLLDNSTLLDVWAEVDGMC 217
            +IN+N LGY   LL +   LDV A ++  C
Sbjct: 1575 EINRNELGYTHLLLASRLPLDVGAYLERTC 1604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,409
Number of Sequences: 37544
Number of extensions: 404687
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)