Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G04
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.73 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.2  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   2.2  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   2.2  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    28   3.9  

>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 222 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--MRQCI*RQ 353
           C P+RPK P G   P  CR  PG      R G  NY +  +++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 198 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 299
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 198  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 293
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 505 QGHPTQYCRDRGHQPGPNRRRICYQSRRDHDPCTV 401
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 505 QGHPTQYCRDRGHQPGPNRRRICYQSRRDHDPCTV 401
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +1

Query: 310 GWGTTVQCGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDHDNT 489
           GWG+T++  S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 490 ELGGPAVFQN----ALVGIVSXG 546
           + GGP +        L G+VS G
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWG 262


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 38  TTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTLLLTIPNSLRRITTRM*ASYE 214
           TT  ++P +   +TI  T  + S+     V+       T++ T+P +    T+   AS  
Sbjct: 239 TTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTASTT 298

Query: 215 *HMPSTSAQTSSRVLLSNKVS 277
              PSTS  T++    +N  S
Sbjct: 299 TTTPSTSTHTTTVTYSTNATS 319


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 38  TTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTLLLTIPNSLRRITTRM*ASYE 214
           TT  ++P +   +TI  T  + S+     V+       T++ T+P +    T+   AS  
Sbjct: 221 TTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTASTT 280

Query: 215 *HMPSTSAQTSSRVLLSNKVS 277
              PSTS  T++    +N  S
Sbjct: 281 TTTPSTSTHTTTVTYSTNATS 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,386,196
Number of Sequences: 27780
Number of extensions: 329836
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)