Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G03
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   151   1e-37
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   5.5  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   7.2  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   7.2  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   9.5  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   9.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  151 bits (365), Expect = 1e-37
 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 1/188 (0%)
 Frame = +3

Query: 90  RFVKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLR 269
           R+VKTWFNQ    +   +     A  +APRP    +RP V+ PT+RY+ KVRAGRGFTL 
Sbjct: 20  RYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLE 78

Query: 270 EIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEA 446
           E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP K  +  KG+A
Sbjct: 79  ELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDA 138

Query: 447 NEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLTGARSIAKLVGIRAKRL 626
            +      T +   ++P+ Q A +  A+PITE+ KNF A+  L+  R+ A+  G RA   
Sbjct: 139 TDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQ 196

Query: 627 KDAXENPD 650
           K   E  +
Sbjct: 197 KKRAEEAE 204


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 435 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 548
           + E N ++ +  TQ +    PV+++ PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 513 PKSVARPITEDEKNFKAYQYLTGARSIAKLVGIRAKRLKDAXE 641
           P     P  E+E      +YL+  +S AK VG   ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 548 EELQSLSIPYRSSFYCQTCGHPSQATEGC 634
           + L  ++ PY  + +C+  G PS   + C
Sbjct: 213 DALHGITGPYGEALFCKELGMPSSVCQNC 241


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 291 NPSFARTIGIAVDPRRRNKSVESLQINV 374
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 168 VAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLREI 275
           +APRP       +  CPT ++   +RA  G    EI
Sbjct: 267 IAPRPHNSGHYTIEACPTSQFEAHLRAICGLPFSEI 302


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 62  YKWHFHKIGKICED 103
           Y WHF ++GKI +D
Sbjct: 188 YGWHFPEMGKIIQD 201


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 388  NIELVLFFSRRARRY*RVKLMKKSANWLL 474
            N+E+ + F+   R+  R+ L KKS N LL
Sbjct: 1502 NMEMWIKFANLCRKSGRISLAKKSLNLLL 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,447
Number of Sequences: 5004
Number of extensions: 49681
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)