Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G03
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   169   2e-42
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   167   9e-42
10_08_0694 - 19929918-19930292,19930633-19930866                       28   5.6  
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   9.9  
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142...    27   9.9  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    27   9.9  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  169 bits (411), Expect = 2e-42
 Identities = 86/183 (46%), Positives = 120/183 (65%), Gaps = 2/183 (1%)
 Frame = +3

Query: 93  FVKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLRE 272
           +VKTWFNQ            K A  + PRP +GPLRP+V+C T++Y+ K RAGRGFTL E
Sbjct: 20  YVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEE 79

Query: 273 IRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEAN 449
           ++A+G+   FA TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +KV  G++ 
Sbjct: 80  LKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDST 139

Query: 450 EEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLTGARSIAKLVGIRAKRL 626
            EE   ATQ++G  MP+ +   +SV    +T+D K FKAY  L   R   + +G R KR 
Sbjct: 140 PEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRA 199

Query: 627 KDA 635
            +A
Sbjct: 200 AEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  167 bits (405), Expect = 9e-42
 Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 2/183 (1%)
 Frame = +3

Query: 93  FVKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLRE 272
           +VKTWFNQ            K A  + PRP +GPLRP+V+C T++Y+ K RAGRGFTL E
Sbjct: 20  YVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTLEE 79

Query: 273 IRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEAN 449
           ++A+G+   +A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +KV  G++ 
Sbjct: 80  LKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDST 139

Query: 450 EEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLTGARSIAKLVGIRAKRL 626
            EE   ATQ++G  MP+ +   +SV    +T++ K FKAY  L   R   + VG R KR 
Sbjct: 140 AEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRA 199

Query: 627 KDA 635
            +A
Sbjct: 200 AEA 202


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 336 RRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAP 515
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++   
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEEAFV 113

Query: 516 K 518
           K
Sbjct: 114 K 114


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 361 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 194
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>04_03_0457 +
           16113087-16113249,16113468-16113498,16114138-16114271,
           16114370-16114518,16114974-16115039,16115159-16115206,
           16115293-16115496,16115614-16115637
          Length = 272

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 60  DTNGISIRLARFVKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPV-VRCPTVRYHT 236
           D N + I    F+K+W N+   V+V S +     + VA          V V  P  +Y  
Sbjct: 192 DANSLEIGTNVFLKSWKNRNKNVVVASIVSCDPTRKVAGIELGTEYLMVHVHFPLAKYEE 251

Query: 237 KVRAGRGFTL 266
            +R  +G+ +
Sbjct: 252 LIRPYKGYKI 261


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 351 VESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQL 479
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,093
Number of Sequences: 37544
Number of extensions: 327523
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)