Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G03
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   165   3e-41
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    68   5e-12
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF077536-3|ABS19474.1|  510|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF077536-2|AAK31410.2|  527|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  165 bits (400), Expect = 3e-41
 Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 1/183 (0%)
 Frame = +3

Query: 96  VKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLREI 275
           +KTWF+Q    +   +     A  +APRP AG LR VVRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 276 RASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-KGKKVLKGEANE 452
           +A+G++ + ARTIGIAVD RR NK+ E L+ N  RLKEY+A+LILFP K     KG+++ 
Sbjct: 82  KAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSA 141

Query: 453 EERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLTGARSIAKLVGIRAKRLKD 632
           EE K+A QLRG ++P+  T      R +T+ E+  + ++ L   R+  K  G R KR ++
Sbjct: 142 EELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRARE 201

Query: 633 AXE 641
           A E
Sbjct: 202 AAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 32/66 (48%), Positives = 43/66 (65%)
 Frame = +3

Query: 96  VKTWFNQQLVVIVESRIE*KSAKAVAPRPAAGPLRPVVRCPTVRYHTKVRAGRGFTLREI 275
           +KTWF+Q    +   +     A  +APRP AG LR VVRCP  RY+TK R GRGF+L+E+
Sbjct: 22  IKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQEL 81

Query: 276 RASGLN 293
           +A+  N
Sbjct: 82  KAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 405  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 560
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 405  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 560
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 405  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 560
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 414 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLTGARS 590
           PKGKK  K  ++ E+++   + R     PV+          + EDEK   + +    ++ 
Sbjct: 43  PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102

Query: 591 IAKLVGIRAKRLKDAXENPD 650
             K  G + K  K   + PD
Sbjct: 103 SKKATGSKKKNKK--TKKPD 120


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 CSLPYCALSYKSSCRQRIYPT 268
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


>AF077536-3|ABS19474.1|  510|Caenorhabditis elegans Hypothetical
           protein C16A11.4b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 125 DELLIKPCLHKSCQSYGNAICIILFPLPILKDLPLPVSEPR 3
           D  LIK C+   C+ + +AIC+ + PL I+      + EPR
Sbjct: 44  DNRLIK-CVE--CEKWQHAICMSVMPLDIIMTYKCEMCEPR 81


>AF077536-2|AAK31410.2|  527|Caenorhabditis elegans Hypothetical
           protein C16A11.4a protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 125 DELLIKPCLHKSCQSYGNAICIILFPLPILKDLPLPVSEPR 3
           D  LIK C+   C+ + +AIC+ + PL I+      + EPR
Sbjct: 44  DNRLIK-CVE--CEKWQHAICMSVMPLDIIMTYKCEMCEPR 81


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
            protein T21D12.9a protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -3

Query: 349  DLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RTVGQRTTG--LRGPAAGR 176
            D + +R  T + +V   E  + EA +++RV  + A        +     G  L    +  
Sbjct: 789  DTILMRKITMVKVVNEDEFVSSEATLTQRVQRIRAMASKLVDNIKSTGNGIYLMASCSAF 848

Query: 175  GATALALFYSILLSTMTTSC*LNHVFTNL 89
            G   L +  SI +     SC  NHVF  L
Sbjct: 849  GLMILGVITSICICIAKCSCNQNHVFNVL 877


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 KSAKAVAPRPAAGPLRPVVRCPTVRYH 233
           K A+   P+   G L PV++CP  + H
Sbjct: 498 KQAERYTPQGGQGSLEPVLKCPLCKRH 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,188
Number of Sequences: 27780
Number of extensions: 280000
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)