Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G01
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    33   0.12 
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    33   0.12 
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
            protein.
          Length = 917

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 330  FDIYVIQVLFSITNMFIFQTILFLTCRTLSNCNISKFCPHCRFTNLSRIT 181
            + + V  V+ SIT+ + F T  +L   +L+  N S  CP+C  TNL  ++
Sbjct: 866  YQVGVFLVVISITS-WTFSTFFYLPMLSLTLPNQSGICPYCEKTNLMHLS 914


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
            chemotaxis protein 14 protein.
          Length = 917

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 330  FDIYVIQVLFSITNMFIFQTILFLTCRTLSNCNISKFCPHCRFTNLSRIT 181
            + + V  V+ SIT+ + F T  +L   +L+  N S  CP+C  TNL  ++
Sbjct: 866  YQVGVFLVVISITS-WTFSTFFYLPMLSLTLPNQSGICPYCEKTNLMHLS 914


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 513 VKCIMTIHKFLHEYF*MDNLI*EFC 587
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 513 VKCIMTIHKFLHEYF*MDNLI*EFC 587
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC443.5 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 360 RYRSTFSFINFDI-YVIQVLFSITNMFIFQTILFL 259
           RY +TF F +FDI   I +L  +  +FI+ T+LF+
Sbjct: 483 RYLNTFQFYSFDIASSIVMLALLVLVFIYFTLLFI 517


>AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical
           protein T28C12.6 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 312 QVLFSITNMFIFQT--ILFLTCRTLSNCNISKFCPHCRFTNLSRITVVF 172
           ++LF I       T  ++FLT    S  N SK  P  +   ++ +T+VF
Sbjct: 4   KILFKINRFDFIATFYVVFLTSEEFSVRNFSKNLPESKSLKITSLTIVF 52


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 339 FINFDIYVIQVL-FSITNMFIFQTILF 262
           F+NFD +V+QV+ FS+  + +   +LF
Sbjct: 177 FLNFDEHVVQVIYFSLMTLTVVSVVLF 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,207
Number of Sequences: 27780
Number of extensions: 263590
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)