Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_G01
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.3  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 128 IQTFFYIFTVCMCM 87
           ++TF  IF +C+C+
Sbjct: 1   MKTFVIIFAICVCV 14


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 316 NSSIIFYNKYVHFPNYFIPNMSNI 245
           NSS IFY     +  +F  N S+I
Sbjct: 198 NSSEIFYTTSQQYYGHFAGNFSSI 221


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +3

Query: 408 KKGSYKLFLIVVRF*GELSHSNLIM*ALLILGNFLVKCIMTIHK 539
           K+G Y+L +  +R+    + +  ++  L I+    V C++  H+
Sbjct: 498 KRGCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHR 541


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +3

Query: 408 KKGSYKLFLIVVRF*GELSHSNLIM*ALLILGNFLVKCIMTIHK 539
           K+G Y+L +  +R+    + +  ++  L I+    V C++  H+
Sbjct: 588 KRGCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHR 631


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,399
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)