Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F24
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 101 7e-23
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 31 0.085
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 2.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 3.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 4.2
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 25 5.6
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 7.3
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 25 9.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.7
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 9.7
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 101 bits (242), Expect = 7e-23
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = +2
Query: 89 RPLEETSRAEGNL-LQNSTFIWVRDHRLHHRYSDTDADPHNSKRGFFFCHIGWLMSKKHP 265
+PLE A G + S W RDHR HHRY+DTD DP+N K+GF++ H+GW++ ++P
Sbjct: 122 KPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP 181
Query: 266 YVIELGRKIDMSDLQNDWMVMFQKKYYYSLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYF 445
+GR D+SDL +D VMF +++ + +A P + + + + F +
Sbjct: 182 R--RIGRS-DVSDLNSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGD-YRGGYFYAGV 237
Query: 446 FRYTFQLNGTWLVNSAAHLYGTRPYD 523
R F + T+ VNS AHL G++P+D
Sbjct: 238 CRLVFVHHATFCVNSLAHLIGSQPFD 263
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 31.5 bits (68), Expect = 0.085
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 293 DMSDLQNDWMVMFQKKYYYSLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYFF 448
+ SD+ ND +F+K + FL +F +V V Y+ E + +S+ YFF
Sbjct: 18 ECSDVAND---VFKKTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFF 66
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 188 TDADPHNSKRGFF-FCHIGWLMSKKHPYVIELGRKIDMSDLQNDWMVMFQKKYYY 349
T P S +G FCH G + +K Y+I + + Q D +++ + + Y
Sbjct: 95 TQLYPSISFKGLVEFCHPGQRIDEKSTYLIVTNTHLKLISFQKDGIILVKNELKY 149
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = +2
Query: 290 IDMSDLQNDWMVMFQKKYYYSLYFLIAVFIPVMVPVYYFDEQWLNS 427
+ ++ L D + F YY +F F+ + + D W+N+
Sbjct: 472 VSVAGLSGDSLADFGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINT 517
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 43 TSEYRGRKEALGCHLKTFGGNIEGGRKPFAELDVH 147
TSE KE H T G N G +KPF LD H
Sbjct: 57 TSESSFYKENTFAHHNTTGSNSVGPKKPF--LDYH 89
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 409 RAMVK*HFCQLLFPLYFSIKWYMARQ 486
+ + K ++ LLFP++FS W+ Q
Sbjct: 269 QTLYKEYWVLLLFPMFFSSNWFTTYQ 294
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 93 LWRKHRGRKETFCRTRRS 146
LW++H GR+ F R +R+
Sbjct: 138 LWKEHCGRERAFLRKKRT 155
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 122 NLLQNSTFIWVRDHRLHHR--YSDTDADPHNSKRGFFFCHIGWLMSKKHPYVIELGRKID 295
N+ + F+ + H H + Y+ + ++S F WL + Y+ E+G +
Sbjct: 166 NIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWLYQEGFAYLPEVGSPVF 225
Query: 296 MSDLQNDWMVMFQKKYYYSLYFLIA 370
++ + N FQ ++L +I+
Sbjct: 226 LNLIYNGLSHFFQNILAFTLLSIIS 250
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 317 WMVMFQKKYYYSLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYFFRYTFQL 466
W F Y L FL+ +F P + Y NSIF+ YT +
Sbjct: 1270 WRRTFTGLYIVHLLFLLTIFYPCPIAYTYV----RNSIFLILSICYTINI 1315
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 368 AVFIPVMVPVYYFDEQWLNSIFVSYFF 448
A+ + + + ++YF E W+ ++ V+ F
Sbjct: 145 AICLMIFISLWYFYETWIKAVKVTVIF 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,229
Number of Sequences: 5004
Number of extensions: 54751
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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