Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F24
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    32   0.35 
03_06_0051 + 31290431-31290610,31290727-31290849,31291771-312919...    28   4.3  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           28   5.6  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    27   9.9  
09_02_0536 + 10354538-10354693,10357407-10357684,10357717-10357852     27   9.9  

>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 274 RTWKENRYERLTKRLDGHVPEKILLLTILLDSGVYPRH 387
           R  K NR+  L+   DGH  E++L +++  +  + P+H
Sbjct: 463 RILKTNRFSELSANTDGHSMERVLNMSVQANVNLIPKH 500


>03_06_0051 +
           31290431-31290610,31290727-31290849,31291771-31291928,
           31292395-31292497,31293077-31293172,31293367-31293432,
           31293500-31293619,31293905-31293991
          Length = 310

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 113 PSMFPPKVLRWQPSASFRPRYS 48
           PS+ P ++L WQP A + P+++
Sbjct: 95  PSLIPYQILSWQPRALYFPQFA 116


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 38  YQLLNTEGGRRHLAATLRPLEET 106
           Y++LN  GG+ H      PLE+T
Sbjct: 634 YKVLNPHGGKAHSVVLFNPLEQT 656


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 397 YWYHDGDKHRYQEV 356
           YWYHD +++RY  V
Sbjct: 493 YWYHDQERYRYVSV 506


>09_02_0536 + 10354538-10354693,10357407-10357684,10357717-10357852
          Length = 189

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 340 FFLEHDHPIVL*VAHIYFPSKF 275
           F L+H HP+V+ +  ++ PS F
Sbjct: 18  FRLQHPHPLVVAILELHIPSNF 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,469,919
Number of Sequences: 37544
Number of extensions: 365588
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)