Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F24
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.41 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    27   0.41 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    27   0.41 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   5.0  
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    23   6.6  
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    23   6.6  
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    23   6.6  
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    23   6.6  

>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 SLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYFFRYTFQLNGTWLVNSA 493
           S+   ++V  PV++P   F   +LNS  V  +F+Y   L+     N A
Sbjct: 578 SISMALSVGPPVVIPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEA 625


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 SLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYFFRYTFQLNGTWLVNSA 493
           S+   ++V  PV++P   F   +LNS  V  +F+Y   L+     N A
Sbjct: 578 SISMALSVGPPVVIPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEA 625


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 SLYFLIAVFIPVMVPVYYFDEQWLNSIFVSYFFRYTFQLNGTWLVNSA 493
           S+   ++V  PV++P   F   +LNS  V  +F+Y   L+     N A
Sbjct: 556 SISMALSVGPPVVIPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEA 603


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 290 IDMSDLQNDWMVMFQK-KYYYSLYFLIAVFIPV--MVPVYYFDEQW 418
           +D  D+  D     +   Y+++  F I   + +  M P YYF E W
Sbjct: 827 LDHHDMDPDMEKALKSGNYFFTATFAIEATMKLIAMSPKYYFQEGW 872


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 159 SLTQMNVEFCKRFPSALDVSSKGLKV 82
           SLT   V  C RFP  L+   + L V
Sbjct: 126 SLTMSGVTTCLRFPGQLNADLRKLAV 151


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 159 SLTQMNVEFCKRFPSALDVSSKGLKV 82
           SLT   V  C RFP  L+   + L V
Sbjct: 126 SLTMSGVTTCLRFPGQLNADLRKLAV 151


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 159 SLTQMNVEFCKRFPSALDVSSKGLKV 82
           SLT   V  C RFP  L+   + L V
Sbjct: 126 SLTMSGVTTCLRFPGQLNADLRKLAV 151


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 159 SLTQMNVEFCKRFPSALDVSSKGLKV 82
           SLT   V  C RFP  L+   + L V
Sbjct: 126 SLTMSGVTTCLRFPGQLNADLRKLAV 151


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,162
Number of Sequences: 2352
Number of extensions: 13614
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)