Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F22
         (94 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    26   3.6  
06_03_0413 - 20541975-20541993,20542045-20542116,20542832-205429...    25   8.3  

>06_03_0095 -
          16575938-16576585,16577028-16577219,16577294-16577392,
          16577496-16577618,16577717-16577929,16578143-16578251,
          16578339-16578427,16578604-16578880,16578974-16579084,
          16579160-16580508,16581218-16581631
          Length = 1207

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 51 SRNLPLKLSGLYSYASC 1
          SR L LKLS LY++A C
Sbjct: 10 SRRLKLKLSALYTFALC 26


>06_03_0413 -
          20541975-20541993,20542045-20542116,20542832-20542927,
          20543113-20543126
          Length = 66

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 78 IIPNTIHAFSRNLPLKLSGLYSY 10
          ++PN  +AF RN+P+ L  L  Y
Sbjct: 27 MLPNQDNAFRRNIPMDLPPLRCY 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,377
Number of Sequences: 37544
Number of extensions: 22466
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 14,793,348
effective HSP length: 12
effective length of database: 14,342,820
effective search space used: 258170760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)