Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F21
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   0.60 
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    23   4.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    23   7.4  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    23   7.4  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    23   7.4  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    22   9.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    22   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    22   9.7  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 66  ILKQDSDSRHYFQYTFHTCSSFTFLQDIYIVRVNALQLMK 185
           +LK DS+ RHY      +  S +  +  Y+V  N ++L K
Sbjct: 235 VLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAK 274


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  YFQYTFHTCSSFTFLQDIYIVRVNALQL 179
           Y  Y FHT    + L DI+++ V  L L
Sbjct: 275 YNDYMFHTEFKCSILYDIWMLPVRQLHL 302


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  YFQYTFHTCSSFTFLQDIYIVRVN 167
           Y  Y+F TCS+  FL  IY   +N
Sbjct: 504 YMPYSFETCSA--FLHYIYCGTLN 525


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 115 IHVQASLFYKIYILLE 162
           ++V  S+FY +YIL+E
Sbjct: 98  LNVAVSIFYVLYILVE 113


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 138 KK*SLNMYETCTGNNGG 88
           KK S N+Y  C GN+ G
Sbjct: 40  KKGSKNVYYGCVGNSSG 56


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 96  NGGYRCLALIS 64
           NGGY C+A+I+
Sbjct: 168 NGGYACVAMIA 178


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 184 FISWSAFTLTIYISCKKVKLEHV*NVYWK*WRLSLSCFNIYSTLSYAST 38
           F+SW  F  TI+I  ++++       Y+  +R ++    +Y+ L  +ST
Sbjct: 144 FLSWLFFGFTIFIIYRELR-------YYVIFRHAMQSSGLYNNLPSSST 185


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 89   PPLFPVHVSYMFKLHFFT 142
            PPL  + VS+ FK  F+T
Sbjct: 1079 PPLSAIVVSWAFKNSFYT 1096


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,723
Number of Sequences: 5004
Number of extensions: 13407
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)