Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F21
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0026 + 20312364-20312687,20312780-20312950                       26   4.9  
11_03_0053 + 9339386-9339781                                           25   8.5  
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324...    25   8.5  

>09_06_0026 + 20312364-20312687,20312780-20312950
          Length = 164

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 88  LSLSCFNIYSTLSYASTQPPHFF 20
           L  S FNI++TL  ++T PP +F
Sbjct: 138 LLYSSFNIWTTLVRSNTPPPLYF 160


>11_03_0053 + 9339386-9339781
          Length = 131

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 105 TGNNGGYRCLALISIRLCRTHRHSRHTFFVLFLV 4
           T  NGGY   +  +    R HR SRHT  +L +V
Sbjct: 76  TARNGGYPRQSQAAS--ARVHRTSRHTGGILLIV 107


>03_06_0192 +
           32230953-32231030,32231130-32231485,32232250-32232425,
           32233857-32234038,32234260-32234443,32235192-32235259,
           32235343-32235495
          Length = 398

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 178 SWSAFTLTIYISCKKVKL 125
           +WS   LT Y +C+ VKL
Sbjct: 121 NWSKLILTHYFTCRNVKL 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,253,991
Number of Sequences: 37544
Number of extensions: 82293
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)