Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F21
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    25   5.6  
AC006776-3|AAR85896.1|   88|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    25   9.8  
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    25   9.8  

>Z80344-3|CAB02488.2|  491|Caenorhabditis elegans Hypothetical
           protein F15D4.5 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  TKQKKCGGCVDAYDRVE*ILKQDSDSRHYFQYTF 113
           T+QKKC  C++ Y+ VE    +D+ +    + TF
Sbjct: 400 TEQKKCHQCLEVYETVEFCGTRDNHTNCPMENTF 433


>Z82085-3|CAB04985.1|  180|Caenorhabditis elegans Hypothetical
           protein ZK218.4 protein.
          Length = 180

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 66  ILKQDSDSRHYFQYTFHTCSSFTFLQDIYIVRVNALQLMK 185
           I+ +DSD     Q  F+  +S+ FLQ I  + +    LMK
Sbjct: 72  IVSEDSDKNKLLQVIFYYYTSYIFLQIILFIGMIFQFLMK 111


>U55856-7|AAA98025.1|  249|Caenorhabditis elegans Hypothetical
           protein F31E8.1 protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 72  LISIRLCRTHRHSRHTFFVLFL 7
           +IS R+C  + HS   FF+ FL
Sbjct: 149 VISTRMCLFYTHSNPDFFIFFL 170


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 14  KTKKVWRLCRCVRQSRIDI 70
           +T K+ RLC   ++SR+DI
Sbjct: 314 QTTKIGRLCTVTKESRVDI 332


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 176 LERIHSNNIYIL*KSEA*TCMKRVLEIMAAIAVLL*YLFDSVVRIDTAATLFL 18
           +  IH+   +I  K      MK+ L  + A      Y+ D+V R DT  T F+
Sbjct: 578 IPEIHTTTNFIFDKDPIYQTMKKQLLGLVASTKFKVYILDAVPRHDTYKTQFI 630


>AC006776-3|AAR85896.1|   88|Caenorhabditis elegans Hypothetical
           protein Y46H3C.7 protein.
          Length = 88

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   RHEEQNKKSVAAVSMRTTESNR 66
           RH   N ++ A  S RTTE+NR
Sbjct: 58  RHHLHNHQATARSSKRTTENNR 79


>Z46828-5|CAA86861.3|  596|Caenorhabditis elegans Hypothetical
           protein R03D7.8 protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 105 TGNNGGYRCLALISIRLCRTHRH 37
           +G +G   CLALI    CR  +H
Sbjct: 397 SGESGSVECLALICSLKCRFPKH 419


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 187 YFISWSAFTLTIYISC--KKVKLEHV 116
           YF+   +F LT+Y+ C    +K+EH+
Sbjct: 53  YFLISGSFILTLYVICLIAIIKIEHM 78


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 117 YETCTGNNGGYRCLALIS 64
           Y  C GNN G  CL L++
Sbjct: 770 YIECDGNNEGVECLRLLN 787


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,717,798
Number of Sequences: 27780
Number of extensions: 79274
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)