Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F21
         (196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   5.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   7.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   7.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    18   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.4  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 105 YTFHTCSSFTFLQDI 149
           +  H CSSF F  D+
Sbjct: 79  WVIHPCSSFRFYWDL 93


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 105 YTFHTCSSFTFLQDI 149
           +  H CSSF F  D+
Sbjct: 79  WVIHPCSSFRFYWDL 93


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 105 YTFHTCSSFTFLQDI 149
           +  H CSSF F  D+
Sbjct: 79  WVIHPCSSFRFYWDL 93


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 114 ETCTGNNGGYRCLALISIRLCRTHR 40
           ++C    G  +C+ + SI LC   R
Sbjct: 174 QSCPLILGSCKCIYVQSINLCMAGR 198


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 5   TRNKTKKVWRLCR 43
           TRN T  + +LCR
Sbjct: 591 TRNATALIKKLCR 603


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  ILKQDSDSRHYFQYTFHTCSSFTFLQD 146
           ++KQ++  RH+     H     T +QD
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQSTAVQD 158


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 191 HLFHKLERIHSNNIY 147
           H F +L   H N++Y
Sbjct: 593 HTFGRLTSKHDNSLY 607


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 63  IRLCRTHRHS 34
           +++CR+ RHS
Sbjct: 343 LQVCRSRRHS 352


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 81  SDSRHYFQY 107
           +DSRHY +Y
Sbjct: 171 TDSRHYDRY 179


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 112 NVYWK*WRLSLSCFNIYSTLS 50
           N YWK  RL+ S      TLS
Sbjct: 89  NQYWKDERLAFSQEEEVLTLS 109


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 93  GGYRCLALISIRLCRTHRHSRHT 25
           G Y C A+ +  + +TH  + HT
Sbjct: 378 GNYTCHAVRNQDVVQTHVLTIHT 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,785
Number of Sequences: 438
Number of extensions: 1006
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)