Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F19
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 105 2e-24
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 105 2e-24
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.16
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.64
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 1.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 3.4
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 25 3.4
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 3.4
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.5
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 24 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 6.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 6.0
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 24 7.9
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 105 bits (252), Expect = 2e-24
Identities = 45/65 (69%), Positives = 59/65 (90%)
Frame = +1
Query: 25 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMITDGLVIKKPVAVHSR 204
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++ DGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 205 ARVRK 219
R+RK
Sbjct: 61 FRIRK 65
Score = 52.8 bits (121), Expect = 1e-08
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 246 RHCGFGKRRGTANARMPQKELWVQRQMVLRKLLLK 350
RH G+GKR+GTA ARMP +W++RQ VLR+LL K
Sbjct: 74 RHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRK 108
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 105 bits (252), Expect = 2e-24
Identities = 45/65 (69%), Positives = 59/65 (90%)
Frame = +1
Query: 25 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMITDGLVIKKPVAVHSR 204
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+I DGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 205 ARVRK 219
R+RK
Sbjct: 61 FRIRK 65
Score = 52.8 bits (121), Expect = 1e-08
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 246 RHCGFGKRRGTANARMPQKELWVQRQMVLRKLLLK 350
RH G+GKR+GTA ARMP +W++RQ VLR+LL K
Sbjct: 74 RHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRK 108
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.16
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 227 SVFLRTRAREWTATGFLMTRPSVIILRMFC 138
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 0.64
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 147 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 52
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 240 FLRALCVFANTSAGMDSNWFLD 175
++R +C F NT +NWFL+
Sbjct: 240 YIRVICSFVNTGFIDSTNWFLN 261
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 225 CVFANTSAGMDSNWFLDDQTIRDHLTD 145
CV N + NW+ + I+ HLTD
Sbjct: 136 CVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 4 RGSHRAMMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 120
+G + K K L +S+ W D NE+NE+
Sbjct: 8 KGDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 28 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 153
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 64 QRLQASSVTLGNSSWHGEILV 2
QR +A S+ LGN + HG+I+V
Sbjct: 530 QRQEAISLFLGNFTVHGKIVV 550
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 160 TDGLVIKKPVAVHSRARVRKNTECAQESDVTV 255
T+ L +KKP+ +H R ++R E +SD TV
Sbjct: 16 TNVLKMKKPLPLHMRTKIR---EHLNKSDPTV 44
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 290 SSISCTSPLTKATVTSLSCAHS 225
SS+S + PLT +T +SLS + S
Sbjct: 162 SSLSSSDPLTSSTFSSLSSSTS 183
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 37 KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMITDG 168
+L +RLAA + RC ++ W D + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 266 LTKATVTSLSCAHSVFLRTRAREWTATGFLMTR 168
L+ +T+ SL + ++ T +++W TG+ TR
Sbjct: 353 LSSSTLESLQLSAALLYSTFSKKWRNTGYPETR 385
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1
Query: 85 KVWLDPNEINEIANTNSRQNIRKMITDGLVIKK 183
K WLDP ++++ T + +++++ I ++K+
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKE 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,173
Number of Sequences: 5004
Number of extensions: 26258
Number of successful extensions: 86
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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