Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F19
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 143 FCLELVLAISLISFGSSHTFFLPHRITEAASL 48
           + + L+L   LISF     F+LP    E  +L
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTL 267


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 24  DEFPKVTEEACSLC 65
           DEF +  +  CSLC
Sbjct: 264 DEFDEFGDSKCSLC 277


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 274 VQLMLECHKKNYGFKGK 324
           VQL +EC  K + F  K
Sbjct: 59  VQLYIECAMKKFSFVDK 75


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 QNIRKMITDGLVIKKPVAVHSRARVRKNTECAQESD 246
           +NIR+ +T G   KK  +    + + K T C   S+
Sbjct: 769 KNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSE 804


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 139 QNIRKMITDGLVIKKPVAVHSRARVRKNTECAQESD 246
           +NIR+ +T G   KK  +    + + K T C   S+
Sbjct: 859 KNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSE 894


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 159 HGWSGHQETSCCPFPRSCSQK 221
           H  +G   +  CP PRS   K
Sbjct: 371 HYSNGQTHSQLCPTPRSTHLK 391


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = -3

Query: 222 VFANTSAGMDSNWFLDDQTI 163
           V+     GM+  WF   +T+
Sbjct: 383 VYNGDEIGMEDRWFTYQETV 402


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 200 EWTATGFLMTRPSV 159
           +W+  GFL TR S+
Sbjct: 156 KWSRKGFLRTRWSI 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,711
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)