Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F18
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    29   0.31 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   0.95 
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    27   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   8.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.9  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 154 SLSAAAYGVLLTTLQIAMLSARDVGTEEDIAEALLMSI 267
           SL   +YG+L+  + +  + + D+G  +D+AE LL  +
Sbjct: 508 SLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAEDLLQDL 545


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 153 CPLERHFAEMKRSPKMVMQTNSN 85
           CP+E+HF   K SPK+V   NSN
Sbjct: 489 CPIEQHFIGAKGSPKIV---NSN 508


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 65  VKNYSSLLLFVCITIFGDRFISAKWRSSGQAYRQLRM 175
           + ++ + LL V  T   ++  +A W + G AYR+L+M
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  VLTFDVKDQVFTIIKMVKNYSSLLLFVCITIFGDRFISA 133
           V++ D   ++FT ++M+     LL    I  +G+R ++A
Sbjct: 464 VISLDENKELFTSVRMLITIGELLTNRIIDFWGERLVNA 502


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 359 TLLDFENIHGIFNQYIRIGNSGFNYKLLIFFTNC 460
           T+  F+N       YI +G     Y  L+F++ C
Sbjct: 51  TIAGFQNFFRTLGHYIYVGAYPTRYAFLVFWSFC 84


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 172 YGVLLTTLQIAMLSARDVGTEEDIAEALL 258
           Y   LTTLQI  LS +++G    + E+ L
Sbjct: 115 YQYSLTTLQIQKLSRKEMGLAPSVIESHL 143


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 FLVIVSSPQNGALADKLIGSCVWGAVNYTSDC 203
           FLV  S+  + ALA +L+  C+   VN+ S C
Sbjct: 500 FLVAYSTFVSSALAVELLKFCLNSYVNFVSVC 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,368
Number of Sequences: 5004
Number of extensions: 41381
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)