Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F18
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0538 + 3932581-3932632,3933014-3933219                           37   0.008
11_08_0028 + 27782072-27782171,27782427-27782620                       31   0.42 
11_08_0013 + 27629086-27629185,27629441-27629634                       31   0.42 
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143...    30   0.96 
02_01_0540 + 3948833-3948911,3948979-3949208                           28   3.9  
07_03_0007 - 12271560-12272207                                         28   5.1  

>02_01_0538 + 3932581-3932632,3933014-3933219
          Length = 85

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 192 TSDCNAECKRRGYRGGHCGSFANVNCWC 275
           TS+CN  C   GY GGHC +F    C C
Sbjct: 41  TSNCNTSCTNEGYTGGHCTTFRR-RCVC 67


>11_08_0028 + 27782072-27782171,27782427-27782620
          Length = 97

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 201 CNAECKRRGYRGGHCGSFANVNCWCET*DVLLNTRYI 311
           C ++C+ +G+ GG C   +N +C C T +   N R++
Sbjct: 53  CMSDCQIKGFNGGLCDGESNDHCCC-TDEARTNNRFL 88


>11_08_0013 + 27629086-27629185,27629441-27629634
          Length = 97

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 201 CNAECKRRGYRGGHCGSFANVNCWCET*DVLLNTRYI 311
           C ++C+ +G+ GG C   +N +C C T +   N R++
Sbjct: 53  CMSDCQIKGFNGGLCDGESNDHCCC-TDEARTNNRFL 88


>01_06_1225 -
           35512211-35512240,35512762-35512850,35514162-35514312,
           35514946-35515011,35515517-35515583,35516517-35516590
          Length = 158

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 298 FSKTSYVSHQQLTLAKLPQCPPLYPRLLHSALQSEV 191
           F+K  YV    L++     CP  YP  LHSA   EV
Sbjct: 69  FAKKIYVKLNFLSVVSDTTCPTQYPNTLHSAKSLEV 104


>02_01_0540 + 3948833-3948911,3948979-3949208
          Length = 102

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 177 GAVNYTSDCNAECKRRGYRGGHCGSFANVNCWC 275
           G   + ++C A C   GY GG+C +  +  C C
Sbjct: 44  GLCGHPTNCIACCTNEGYTGGYCTTVRH-KCMC 75


>07_03_0007 - 12271560-12272207
          Length = 215

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 250 LPQCPPLYPRLLHSALQSEV*LTAPHTQLPISLSARAPFCGDE 122
           +P  PPL PRLL S+        +P    P SLSAR  F  D+
Sbjct: 19  IPTLPPLLPRLLSSSFSHCPSSLSP--AKPPSLSARLSFVFDQ 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,031
Number of Sequences: 37544
Number of extensions: 241570
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)