Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F18
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.49
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.49
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.49
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 1.1
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 1.1
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 8.0
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 8.0
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 8.0
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 8.0
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 129 PQNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHCGSFANVNCWCE 278
P NG + C G NY EC G +G C S N C+C+
Sbjct: 630 PCNGNFTGRTCDKCAAGFYNYPDCRGCECLLSGAKGQTCDS--NGQCYCK 677
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 129 PQNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHCGSFANVNCWCE 278
P NG + C G NY EC G +G C S N C+C+
Sbjct: 630 PCNGNFTGRTCDKCAAGFYNYPDCRGCECLLSGAKGQTCDS--NGQCYCK 677
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 129 PQNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHCGSFANVNCWCE 278
P NG + C G NY EC G +G C S N C+C+
Sbjct: 630 PCNGNFTGRTCDKCAAGFYNYPDCRGCECLLSGAKGQTCDS--NGQCYCK 677
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 129 PQNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHCGSFANVNCWCE 278
P NG + C G NY EC G +G C S N C+C+
Sbjct: 630 PCNGNFTGRTCDKCAAGFYNYPDCRGCECLLSGAKGQTCDS--NGQCYCK 677
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHC 245
+NGAL D + G C CN C +GY G HC
Sbjct: 1217 ENGALCDPISGHCSCQPGWRGKKCNRPC-LKGYFGRHC 1253
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGGHC 245
+NGAL D + G C CN C +GY G HC
Sbjct: 1217 ENGALCDPISGHCSCQPGWRGKKCNRPC-LKGYFGRHC 1253
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGG---HCGSFANVNC 269
QNGA D G C+ + + + C EC + G C N NC
Sbjct: 252 QNGATCDNTNGKCICKSGYHGALCENECSVGFFGSGCTQKCDCLNNQNC 300
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGG---HCGSFANVNC 269
QNGA D G C+ + + + C EC + G C N NC
Sbjct: 252 QNGATCDNTNGKCICKSGYHGALCENECSVGFFGSGCTQKCDCLNNQNC 300
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGG---HCGSFANVNC 269
QNGA D G C+ + + + C EC + G C N NC
Sbjct: 252 QNGATCDNTNGKCICKSGYHGALCENECSVGFFGSGCTQKCDCLNNQNC 300
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 132 QNGALADKLIGSCVWGAVNYTSDCNAECKRRGYRGG---HCGSFANVNC 269
QNGA D G C+ + + + C EC + G C N NC
Sbjct: 252 QNGATCDNTNGKCICKSGYHGALCENECSVGFFGSGCTQKCDCLNNQNC 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,848
Number of Sequences: 27780
Number of extensions: 237410
Number of successful extensions: 534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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