Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F17
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 44 4e-06
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 43 5e-06
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 0.78
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 2.4
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 24 2.4
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 24 3.2
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 24 3.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 23 4.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 5.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 5.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 5.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 5.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 5.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 5.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 5.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 5.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 5.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 5.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 5.5
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 23 7.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 23 7.3
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 22 9.6
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 22 9.6
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 22 9.6
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 22 9.6
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 22 9.6
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 43.6 bits (98), Expect = 4e-06
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +1
Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
VVA+NDPFI LDYM Y+F+YDS
Sbjct: 30 VVAVNDPFIDLDYMAYMFKYDS 51
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 43.2 bits (97), Expect = 5e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 130 KGADVVAINDPFIGLDYMVYLFQYDS 207
K VVAINDPFI L+YM Y+F+YDS
Sbjct: 26 KTIQVVAINDPFIDLEYMAYMFKYDS 51
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 0.78
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 176 SRPMKGSLIATTSAPLSNRS-TEHQATDATNTVNSDFRHD 60
S+P+KG +I TS L R+ +AT SDF D
Sbjct: 4 SKPLKGFVICCTSIDLKQRTEISTKATKLGAAYRSDFTKD 43
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLFQY 201
D++ + P++ DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 167 MKGSLIATTSAPLSNRSTEHQATDATNTVNSDFRHDYGKSIFSQ 36
++ SLI SAP ++ EH+A A + F +G +I Q
Sbjct: 211 LEHSLILNESAPPADVEDEHKAKIAARLSSVGFGSFFGAAILFQ 254
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = -3
Query: 195 EKVDHVVKTNERIIDSNNIGTLIKSKHGAPGD 100
+K HV+K + ++++ + L+K H G+
Sbjct: 850 DKPVHVMKLSGKLVNGEKVLALVKMAHSKDGE 881
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 23.8 bits (49), Expect = 3.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 176 SRPMKGSLIATTSAPLSNRST-EHQATDATNTVNSDFRHDYGKSI 45
S P +AT A L+ S + AT+++NT+N +DY S+
Sbjct: 516 SMPATPLELATPFANLNVSSPLDRNATNSSNTLNGSAMNDYFASL 560
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLIKSK 118
L K+D V +TNER+ +++I +LI ++
Sbjct: 1100 LAKLDIVKETNERLSTADSILSLIDTE 1126
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 198 LEKVDHVVKTNERIIDSNNIGTLI 127
LEK H + N ID ++IGT++
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTIL 1277
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 163 FIGLDYMVYLFQY 201
FIG +++Y+FQY
Sbjct: 350 FIGSSFLLYVFQY 362
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 161 GSLIATTSAPLSNRSTEHQATDATNTVNSDFRHDYGKSI 45
GSL + +S+P +E DA + + +F SI
Sbjct: 83 GSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSI 121
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 137 APLSNRSTEHQATDATNTVNSDFRHDYGKSIFSQRSHS 24
AP++N ST+ +A+ +NS + D S +S SH+
Sbjct: 586 APVNNFSTDSRAS-----INSSYLLDSAASNYSGTSHN 618
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 132 LIKSKHGAPGDRCDQYR*FRFST*LW*EYIFATKSLN 22
++ K P C+QY+ F W +T+SLN
Sbjct: 429 IVLPKEFNPHSFCNQYKGFAVGNRFWQCRTLSTESLN 465
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 207 RIILEKVDHVVKTNERIIDSNNIGTLIKSKHGAPG--DRCDQ 88
R + EK D V+K +E+ + N + +HG G +RC Q
Sbjct: 38 RPVEEKFDAVIKLDEKQLSEMNDWCI--EQHGKSGLTERCRQ 77
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 14 E*TLSDFVAKIYSYHNHVENRN 79
E L V IYS+HN +E+ N
Sbjct: 81 EHALDALVYPIYSHHNILEHEN 102
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 103 AWCSVLRFDKGADV 144
AWC + RFD A V
Sbjct: 515 AWCEIHRFDSFAPV 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,925
Number of Sequences: 5004
Number of extensions: 10814
Number of successful extensions: 56
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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