Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F17
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 40 4e-04
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 40 4e-04
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 40 4e-04
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 38 0.001
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 29 0.51
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 2.1
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 2.1
02_05_1061 - 33825948-33825995,33826094-33826243,33827154-338273... 27 2.7
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 26 3.6
05_01_0589 - 5281105-5281434,5281532-5281613,5281833-5281963,528... 26 3.6
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 26 4.8
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 25 6.3
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156... 25 6.3
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 25 6.3
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 25 6.3
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 25 8.4
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 39.5 bits (88), Expect = 4e-04
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
++VA+NDPFI DYM Y+F+YD+
Sbjct: 29 ELVAVNDPFITTDYMTYMFKYDT 51
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
+VVA+NDPFI YM Y+F+YDS
Sbjct: 105 EVVAVNDPFIDAKYMAYMFKYDS 127
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 39.5 bits (88), Expect = 4e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
+VVA+NDPFI YM Y+F+YDS
Sbjct: 164 EVVAVNDPFIDAKYMAYMFKYDS 186
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
++VA+NDPFI +YM Y+F+YD+
Sbjct: 34 ELVAVNDPFITTEYMTYMFKYDT 56
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 29.1 bits (62), Expect = 0.51
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 139 DVVAINDPFIGLDYMVYLF 195
++VA+NDPFI DYM+ F
Sbjct: 29 ELVAVNDPFITTDYMICEF 47
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 35 VAKIYSYHNHVENRN*RYWSHRSPGAP 115
+ KI+ H +EN N +YW+ R+ P
Sbjct: 963 IYKIFPLHEKIENINDQYWTLRAEEIP 989
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 14 E*TLSDFVAKIYSYHNHVENRN 79
E +L+DFV ++Y YH+ +N++
Sbjct: 164 ELSLADFVGELYGYHDDCKNKS 185
>02_05_1061 -
33825948-33825995,33826094-33826243,33827154-33827300,
33827381-33827468,33828569-33828714,33828861-33829089,
33829193-33829482
Length = 365
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 146 TTSAPLS-NRSTEHQATDATNTVNSDFRHDYGKSIFSQRSHSTFTL 12
TTS P++ N T+ + T N+D R K F S++TF L
Sbjct: 25 TTSCPVTANNHTDDDDNEKTGNANTDPRVVPAKCPFGYDSNNTFKL 70
>12_02_0381 + 18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 35 VAKIYSYHNHVENRN*RYWSHRSPGAP 115
+ KI+ H +EN N +YW+ R+ P
Sbjct: 924 IYKIFPPHEKIENINDQYWTLRAEEIP 950
>05_01_0589 -
5281105-5281434,5281532-5281613,5281833-5281963,
5282029-5282169,5282274-5282429,5282522-5282596,
5282777-5282956,5283097-5283247,5283526-5283612,
5284239-5284349,5284447-5284634
Length = 543
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 207 RIILEKVDHVVKTNERIIDSNNIGTLIKSKHGAPGDR 97
++++E D V + + R+ + +G L K G PGD+
Sbjct: 444 KMVVEICDIVTRRSARLAAAGIVGILRKIGRGVPGDK 480
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 204 IILEKVDHVVKTNERIIDSNNIGTLIKSKHGAPGDRCD 91
IIL ++D +++ +I +++ L+K K A G R D
Sbjct: 610 IILLEMDRILRPEGTVIIRDDVDMLVKVKSAADGMRWD 647
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 86 YWSHRSPGAPCFDLIR 133
++ HRSP +PCF L+R
Sbjct: 32 HFLHRSPPSPCFLLLR 47
>09_01_0101 -
1558889-1558989,1559105-1559214,1559300-1559396,
1560462-1560537,1561577-1561666,1561972-1562070
Length = 190
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 106 WCSVLRFDKGADVVAINDPFIGLDYMVYL 192
W ++ + ++VA+ND FI +YMV L
Sbjct: 38 WEALALQSEYVELVAVNDSFITTEYMVTL 66
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 205 NHTGKGRPCSQDQ*KDH**QQHRHPY 128
N+ G+G P SQ Q H QQ HP+
Sbjct: 20 NYYGRGPPPSQHQQHQHQHQQPPHPH 45
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 119 STEHQATDATNTVNSDFRHDYGKSIFSQRSHSTFTLH 9
STE + D TN H + S+ SQ S + TLH
Sbjct: 475 STELASRDGTNDSRVSIGHYHSTSMQSQSSLAQHTLH 511
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 95 ATNTVNSDFRHDYGKSIFSQRSHSTFTLHKM 3
+TNT D D K+ S+ H TFT K+
Sbjct: 188 STNTQMQDNLDDMAKAFESKERHVTFTQQKL 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,062,990
Number of Sequences: 37544
Number of extensions: 68837
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -