Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F17
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15254-2|CAA33327.1|  341|Caenorhabditis elegans gpd-3 gene prod...    48   1e-06
U49941-6|AAB53874.1|  341|Caenorhabditis elegans Gpd (glyceralde...    48   1e-06
U49941-5|AAB53869.1|  341|Caenorhabditis elegans Gpd (glyceralde...    48   1e-06
Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical pr...    45   8e-06
Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical pr...    45   8e-06
X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.        45   8e-06
X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.        45   8e-06
X15254-1|CAA33326.1|  341|Caenorhabditis elegans gpd-2 gene prod...    45   8e-06
X04818-1|CAA28504.1|  341|Caenorhabditis elegans glyceraldehyde-...    45   8e-06
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    29   0.34 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    29   0.34 
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    26   3.2  
Z69793-2|CAA93671.1|  136|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    25   5.6  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    25   9.7  

>X15254-2|CAA33327.1|  341|Caenorhabditis elegans gpd-3 gene product
           protein.
          Length = 341

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +1

Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
           +VVA+NDPFI +DYMVYLFQYDS
Sbjct: 29  NVVAVNDPFISIDYMVYLFQYDS 51


>U49941-6|AAB53874.1|  341|Caenorhabditis elegans Gpd
           (glyceraldehyde 3-phosphatedehydrogenase) protein 2
           protein.
          Length = 341

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +1

Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
           +VVA+NDPFI +DYMVYLFQYDS
Sbjct: 29  NVVAVNDPFISIDYMVYLFQYDS 51


>U49941-5|AAB53869.1|  341|Caenorhabditis elegans Gpd
           (glyceraldehyde 3-phosphatedehydrogenase) protein 3
           protein.
          Length = 341

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +1

Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
           +VVA+NDPFI +DYMVYLFQYDS
Sbjct: 29  NVVAVNDPFISIDYMVYLFQYDS 51


>Z49070-2|CAA88870.1|  341|Caenorhabditis elegans Hypothetical
           protein T09F3.3 protein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
           VVA+NDPFI +DYMVYLF+YDS
Sbjct: 30  VVAVNDPFITIDYMVYLFKYDS 51


>Z48783-3|CAA88697.1|  341|Caenorhabditis elegans Hypothetical
           protein F33H1.2 protein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
           VVA+NDPFI +DYMVYLF+YDS
Sbjct: 30  VVAVNDPFITIDYMVYLFKYDS 51


>X52674-1|CAA36900.1|  341|Caenorhabditis elegans gpd-1 protein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
           VVA+NDPFI +DYMVYLF+YDS
Sbjct: 30  VVAVNDPFITIDYMVYLFKYDS 51


>X52673-1|CAA36899.1|  341|Caenorhabditis elegans gpd-4 protein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
           VVA+NDPFI +DYMVYLF+YDS
Sbjct: 30  VVAVNDPFITIDYMVYLFKYDS 51


>X15254-1|CAA33326.1|  341|Caenorhabditis elegans gpd-2 gene product
           protein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +1

Query: 139 DVVAINDPFIGLDYMVYLFQYDS 207
           +V A+NDPFI +DYMVYLFQYDS
Sbjct: 29  NVDAVNDPFISIDYMVYLFQYDS 51


>X04818-1|CAA28504.1|  341|Caenorhabditis elegans
           glyceraldehyde-3-phosphate dehydrogenaseprotein.
          Length = 341

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +1

Query: 142 VVAINDPFIGLDYMVYLFQYDS 207
           VVA+NDPFI +DYMVYLF+YDS
Sbjct: 30  VVAVNDPFITIDYMVYLFKYDS 51


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
            helicase-4 protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 204  IILEKVDHVVKTN-ERIIDSNNIGTLIKSKHGAPGDRCDQ 88
            + L K+ ++V    +R++DSN+ G  +    G+PG+R  Q
Sbjct: 886  VSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQ 925


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line helicase
            protein 4 protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 204  IILEKVDHVVKTN-ERIIDSNNIGTLIKSKHGAPGDRCDQ 88
            + L K+ ++V    +R++DSN+ G  +    G+PG+R  Q
Sbjct: 886  VSLSKMKYIVLDEADRMVDSNDFGEEVSKIIGSPGERTQQ 925


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 192  KVDHVVKTNERIIDSNNIGTLIKSKHGAPGD 100
            K+ ++ +T+   + ++++GT ++SK  APGD
Sbjct: 4707 KISNLSQTSLNKMAASDVGTTVESKIQAPGD 4737



 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 152  IATTSAPLSNRSTEHQATDATNTVNSDFRHDYGKSIFSQRSHSTFT 15
            I T SA L   S     T A++ +  D ++DY +    + + +TFT
Sbjct: 4039 ITTFSALLGTLSICDLVTMASSNIQVDSKYDYYRRPAPKNAETTFT 4084


>Z69793-2|CAA93671.1|  136|Caenorhabditis elegans Hypothetical
           protein R03A10.2 protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 112 SVLRFDKGADVVAINDPFIGLDY 180
           S++RF K AD V  +D F+G  Y
Sbjct: 35  SLVRFGKRADPVGTDDVFLGESY 57


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 146 TTSAPLSNRSTEHQATDATNTVNSDFRHDYG 54
           T+++PL   STE  AT AT++V++     +G
Sbjct: 335 TSTSPLLASSTERTATTATSSVSTPKHPHHG 365


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -1

Query: 92  TNTVNSD----FRHDYGKSIFSQRSHSTFTL 12
           TNT+  D    F + YG  IF+ R+ +TF++
Sbjct: 355 TNTLTEDNEGYFENIYGDLIFTSRTSNTFSI 385


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 146 TTSAPLSNRSTEHQATDATNTVNSDFRHDY 57
           TT  P ++ +T H+ T +T     D  +DY
Sbjct: 195 TTETPTTSEATTHEPTASTELPPPDAPNDY 224


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 146 TTSAPLSNRSTEHQATDATNTVNSDFRHDY 57
           TT  P ++ +T H+ T +T     D  +DY
Sbjct: 145 TTETPTTSEATTHEPTASTELPPPDAPNDY 174


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 170  PMKGSLIATTSAPLSNRSTEHQATDATNTVNSDFRHDYGKSIF 42
            P +GS +     PL  +S  H +   T +    F      SIF
Sbjct: 1433 PPRGSSVFRAPPPLPPKSNRHNSNSPTLSSEQPFEDPMSPSIF 1475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,417,021
Number of Sequences: 27780
Number of extensions: 61156
Number of successful extensions: 208
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)