Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_F16
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 227 5e-60
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 227 5e-60
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 140 5e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.64
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.1
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 28 4.5
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 28 4.5
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.9
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 227 bits (554), Expect = 5e-60
Identities = 102/127 (80%), Positives = 114/127 (89%)
Frame = +2
Query: 11 RREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 190
RR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K
Sbjct: 17 RRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVK 75
Query: 191 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 370
NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct: 76 NGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Query: 371 KNERPRS 391
K E+PRS
Sbjct: 136 KKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 227 bits (554), Expect = 5e-60
Identities = 102/127 (80%), Positives = 114/127 (89%)
Frame = +2
Query: 11 RREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 190
RR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K
Sbjct: 187 RRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVK 245
Query: 191 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 370
NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct: 246 NGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 305
Query: 371 KNERPRS 391
K E+PRS
Sbjct: 306 KKEKPRS 312
Score = 223 bits (545), Expect = 6e-59
Identities = 100/125 (80%), Positives = 112/125 (89%)
Frame = +2
Query: 11 RREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 190
RR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K
Sbjct: 17 RRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVK 75
Query: 191 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 370
NGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE
Sbjct: 76 NGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKE 135
Query: 371 KNERP 385
K E+P
Sbjct: 136 KKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 140 bits (339), Expect = 5e-34
Identities = 62/88 (70%), Positives = 71/88 (80%)
Frame = +2
Query: 11 RREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 190
RR QRWADK +KK+H G WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+K
Sbjct: 88 RRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVK 146
Query: 191 NGKKVTAFVPRDGCLNHIEENDEVLVAG 274
NGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 147 NGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 254 DEVLVAGFGRKGHAVGDIPGVRFKVVK 334
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 336 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 205
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 179 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 81
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 6 RIVASSDGPTRNSKKPTWVRDGRRTPSVVHL 98
R++ PT+++ +PTWV + P+V+ L
Sbjct: 57 RLLHGKPTPTQHAPEPTWVNPSKPKPTVLSL 87
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 233 LNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKNERPRS 391
L H+++ND V V+G H V D G + K+ +V+ L ++N+RP++
Sbjct: 117 LKHLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQRPQN 167
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 330 TTLNLTPGMSPTAWPLRPNPATNTSS 253
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,151
Number of Sequences: 37544
Number of extensions: 332834
Number of successful extensions: 942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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