Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_F16
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   241   2e-64
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   5e-07
AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   5.4  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   5.4  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  241 bits (590), Expect = 2e-64
 Identities = 108/127 (85%), Positives = 119/127 (93%)
 Frame = +2

Query: 11  RREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 190
           R+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIK
Sbjct: 17  RQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIK 76

Query: 191 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKE 370
           NGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K 
Sbjct: 77  NGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKG 136

Query: 371 KNERPRS 391
           K ERPRS
Sbjct: 137 KKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 89  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 268
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 269 AGFGRK 286
            G GR+
Sbjct: 129 KG-GRR 133


>AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical
           protein R148.2 protein.
          Length = 95

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 242 IEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKNERPR 388
           +E+N   +++  G  G  V D  GVR     K+  +ANV  L +   KN  P+
Sbjct: 5   LEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 206 TAFVPRDGCLNHIEEN 253
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 349 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 212
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 349 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 212
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 230 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 337
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   RGSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 96
           R  SR+   R+   +SP   E   +P RWC+
Sbjct: 578 RSRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,924
Number of Sequences: 27780
Number of extensions: 260222
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)